Eucgr.A02462 (Eucalyptus grandis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Eucgr.A02462 T228441_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT

AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.857 0.842
HAT2
M06929_2.00
Arabidopsis thaliana
NHAATGATTRN

NYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT2_colamp_a
0.798 0.842
HAT2
M06930_2.00
Arabidopsis thaliana
WNYAATCATWD

HWATGATTRNW
Dap-seq
OMalley et al.(2016)
HAT2_col_v31
0.798 0.842
HAT1
M02047_2.00
Arabidopsis thaliana
NMATGATTRN

NYAATCATKN
PBM
Weirauch et al.(2014)
pTH8107
0.796 0.789
HAT1
M06922_2.00
Arabidopsis thaliana
NHAATGATTRNNWDW

WHWNNYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT1_col_a
0.796 0.789
HAT1
M06923_2.00
Arabidopsis thaliana
NYAATCATTDN

NHAATGATTRN
Dap-seq
OMalley et al.(2016)
HAT1_colamp_a
0.796 0.789
ATHB-X
M06902_2.00
Arabidopsis thaliana
HHAATRATTRN

NYAATYATTDD
Dap-seq
OMalley et al.(2016)
ATHB18_col_a
0.778 0.702
ATHB-X
M06903_2.00
Arabidopsis thaliana
NYAATGATTRV

BYAATCATTRN
Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a
0.778 0.702
ATHB-4
M01065_2.00
Arabidopsis thaliana
NBMTGCATRNN

NNYATGCAKVN
PBM
Sullivan et al.(2014)
pTH8184
0.763 0.825
ATHB-4
M02042_2.00
Arabidopsis thaliana
NNWTNATTRN

NYAATNAWNN
PBM
Weirauch et al.(2014)
pTH8667
0.763 0.825
HAT3
M00728_2.00
Arabidopsis thaliana
DTGATTRV

BYAATCAH
PBM
Chang et al.(2013)
pTH7400
0.763 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.A02462.1 Homeodomain 165 221

Links

Other Homeodomain family TFs
Other Eucalyptus grandis TFs

695 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HMGB3 Arabidopsis thaliana AT1G20696 I 0.000
BGLB013830 Biomphalaria glabrata BGLB013830 N 0.000
D917_01243 Trichinella nativa D917_01243 N 0.000
D917_08464 Trichinella nativa D917_08464 N 0.000
DILT_0001977801 Diphyllobothrium latum DILT_0001977801 N 0.000
F775_32121 Aegilops tauschii F775_32121 N 0.000
GD11309 Drosophila simulans FBgn0183058 N 0.000
GLYMA20G01570 Glycine max GLYMA20G01570 N 0.000
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.000
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.000
GPLIN_000847800 Globodera pallida GPLIN_000847800 N 0.000
gw1.88.46.1 Fragilariopsis cylindrus gw1.88.46.1 N 0.000
LCUP018488 Lucilia cuprina LCUP018488 N 0.000
MCINX003696 Melitaea cinxia MCINX003696 N 0.000
MDP0000242568 Malus domestica MDP0000242568 I 0.000
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.000
PDK_20s1781681g001 Phoenix dactylifera PDK_20s1781681g001 N 0.000
Solyc03g032130.2 Solanum lycopersicum Solyc03g032130.2 N 0.000
SVUK_0000827101 Strongylus vulgaris SVUK_0000827101 N 0.000
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.000
Traes_5AL_D1358AF6E Triticum aestivum Traes_5AL_D1358AF6E I 0.000
Traes_7AL_364A6E96F Triticum aestivum Traes_7AL_364A6E96F N 0.000
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.000
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N 0.000
TTAC_0000838901 Hydatigera taeniaeformis TTAC_0000838901 N 0.000