Eucgr.H02817 (Eucalyptus grandis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Eucgr.H02817 T228489_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HESX1
M03187_2.00 		Homo sapiens
NHTAATTRVH
DBYAATTADN		 SELEX
Jolma et al.(2013)
HESX1_1 		0.603 0.213
HESX1
M03188_2.00 		Homo sapiens
NTAATTRGYAATTAD
HTAATTRCYAATTAN		 SELEX
Jolma et al.(2013)
HESX1_2 		0.603 0.213
HESX1
M05227_2.00 		Homo sapiens
DYAATTRV
BYAATTRH		 SELEX
Yin et al.(2017)
HESX1_FL_HT-SELEX 		0.603 0.213
HESX1
M05228_2.00 		Homo sapiens
NYAATTRD
HYAATTRN		 SELEX
Yin et al.(2017)
HESX1_FL_Methyl-HT-SELEX 		0.603 0.213
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.H02817.1 Homeodomain 84 112
Eucgr.H02817.1 Homeodomain 107 124

Links

Other Homeodomain family TFs
Other Eucalyptus grandis TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC09G10660 Oryza punctata OPUNC09G10660 I 0.799
OMERI08G14040 Oryza meridionalis OMERI08G14040 I 0.799
PGSC0003DMG400021423 Solanum tuberosum PGSC0003DMG400021423 I 0.784
ONIVA08G19230 Oryza nivara ONIVA08G19230 N 0.767
TRIUR3_27997 Triticum urartu TRIUR3_27997 N 0.762
MLOC_54921 Hordeum vulgare MLOC_54921 I 0.738
COCC4DRAFT_69376 Bipolaris maydis COCC4DRAFT_69376 I 0.640
estExt_fgenesh1_pg.C_60239 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_60239 I 0.640
BGIBMGA003233 Bombyx mori BGIBMGA003233 I 0.626
CGI_10009720 Crassostrea gigas CGI_10009720 I 0.619
NBR_0000705501 Nippostrongylus brasiliensis NBR_0000705501 I 0.618
MCINX008871 Melitaea cinxia MCINX008871 I 0.616
Aan_R011917 Calypte anna Aan_R011917 I 0.612
PRRX2 Cavia porcellus ENSCPOG00000021821 I 0.612
LHX6 Gorilla gorilla ENSGGOG00000008310 I 0.608
ENSP00000360811-D1 Bos grunniens ENSP00000360811-D1 I 0.608
HPBE_0000873701 Heligmosomoides bakeri HPBE_0000873701 I 0.606
HESX1 Homo sapiens ENSG00000163666 D 0.603
MCINX007054 Melitaea cinxia MCINX007054 I 0.600