evm.TU.supercontig_29.29 (Carica papaya)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 evm.TU.supercontig_29.29 T228549_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK25034.1
M01254_2.00
Cannabis sativa
NNTGACRKBN

NVMYGTCANN
PBM
Lambert et al.(2019)
pTH11259
0.647 0.660
GRMZM2G087741
M02138_2.00
Zea mays
NNTGACRKCN

NGMYGTCANN
PBM
Weirauch et al.(2014)
pTH5816
0.636 0.679
KNAT4
M01238_2.00
Arabidopsis thaliana
NNGACNNNN

NNNNGTCNN
PBM
Lambert et al.(2019)
pTH9968
0.629 0.811
KNAT3
M02051_2.00
Arabidopsis thaliana
NNNGACVBNN

NNVBGTCNNN
PBM
Weirauch et al.(2014)
pTH7600
0.629 0.811
KNAT7
M01064_2.00
Arabidopsis thaliana
TGACRKST

ASMYGTCA
PBM
Sullivan et al.(2014)
pTH9798
0.627 0.887
HOS66
M02156_2.00
Oryza sativa
NNNNDHNN

NNDHNNNN
PBM
Weirauch et al.(2014)
pTH8332
0.621 0.925
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_29.29 Homeodomain 222 277

Links

Other Homeodomain family TFs
Other Carica papaya TFs

246 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29848.m004577 Ricinus communis 29848.m004577 I 0.629
30190.m011101 Ricinus communis 30190.m011101 I 0.782
AALB005452 Anopheles albimanus AALB005452 I 0.608
AMTR_s00001p00264520 Amborella trichopoda AMTR_s00001p00264520 I 0.629
AMTR_s00026p00162850 Amborella trichopoda AMTR_s00026p00162850 I 0.625
Aquca_013_00468 Aquilegia coerulea Aquca_013_00468 I 0.629
Aquca_016_00110 Aquilegia coerulea Aquca_016_00110 I 0.625
BGIOSGA011746 Oryza indica BGIOSGA011746 I 0.621
BGIOSGA028399 Oryza indica BGIOSGA028399 I 0.629
Bo01061s030 Brassica oleracea Bo01061s030 I 0.772
Bo1g010750 Brassica oleracea Bo1g010750 I 0.624
Bo2g010190 Brassica oleracea Bo2g010190 I 0.629
Bo2g158910 Brassica oleracea Bo2g158910 I 0.629
Bo3g006870 Brassica oleracea Bo3g006870 I 0.629
Bo3g043050 Brassica oleracea Bo3g043050 I 0.606
Bo7g096160 Brassica oleracea Bo7g096160 I 0.625
Bo7g115600 Brassica oleracea Bo7g115600 I 0.628
Bo9g028790 Brassica oleracea Bo9g028790 I 0.627
Bostr.22157s0023 Boechera stricta Bostr.22157s0023 I 0.627
Bostr.23997s0006 Boechera stricta Bostr.23997s0006 I 0.629
Bostr.29827s0294 Boechera stricta Bostr.29827s0294 I 0.629
Bostr.3877s0047 Boechera stricta Bostr.3877s0047 I 0.606
Bostr.7867s1058 Boechera stricta Bostr.7867s1058 I 0.628
Bra000638 Brassica rapa Bra000638 I 0.606
Bra006085 Brassica rapa Bra006085 I 0.629
Bra011317 Brassica rapa Bra011317 I 0.624
Bra023965 Brassica rapa Bra023965 I 0.628
Bra027006 Brassica rapa Bra027006 I 0.630
Bra028554 Brassica rapa Bra028554 I 0.629
Bra036636 Brassica rapa Bra036636 I 0.627
BRADI1G76970 Brachypodium distachyon BRADI1G76970 I 0.621
BRADI3G19927 Brachypodium distachyon BRADI3G19927 I 0.629
Cagra.0628s0006 Capsella grandiflora Cagra.0628s0006 I 0.642
Cagra.12385s0010 Capsella grandiflora Cagra.12385s0010 I 0.628
Cagra.1398s0046 Capsella grandiflora Cagra.1398s0046 I 0.629
Cagra.1670s0003 Capsella grandiflora Cagra.1670s0003 I 0.627
Cagra.7524s0001 Capsella grandiflora Cagra.7524s0001 I 0.606
Carubv10001020m.g Capsella rubella Carubv10001020m.g I 0.629
Carubv10001144m.g Capsella rubella Carubv10001144m.g I 0.629
Carubv10002748m.g Capsella rubella Carubv10002748m.g I 0.606
Carubv10005036m.g Capsella rubella Carubv10005036m.g I 0.628
Carubv10020735m.g Capsella rubella Carubv10020735m.g I 0.627
cassava20740.m1 Manihot esculenta cassava20740.m1 I 0.629
cassava23924.valid.m1 Manihot esculenta cassava23924.valid.m1 I 0.602
cassava30127.valid.m1 Manihot esculenta cassava30127.valid.m1 I 0.782
cassava36784.valid.m1 Manihot esculenta cassava36784.valid.m1 I 0.625
cassava7316.valid.m1 Manihot esculenta cassava7316.valid.m1 I 0.625
cassava7317.valid.m1 Manihot esculenta cassava7317.valid.m1 I 0.625
cassava7318.valid.m1 Manihot esculenta cassava7318.valid.m1 I 0.625
cassava7319.valid.m1 Manihot esculenta cassava7319.valid.m1 I 0.625
cassava8123.valid.m1 Manihot esculenta cassava8123.valid.m1 I 0.629
Ca_01733 Cicer arietinum Ca_01733 I 0.629
Ca_02401 Cicer arietinum Ca_02401 I 0.629
Ca_06754 Cicer arietinum Ca_06754 I 0.625
Ca_09068 Cicer arietinum Ca_09068 I 0.629
Ca_24500 Cicer arietinum Ca_24500 I 0.625
chr1.LjT33H07.80.nd Lotus japonicus chr1.LjT33H07.80.nd I 0.771
chr2.CM0304.440.nc Lotus japonicus chr2.CM0304.440.nc I 0.782
chr6.CM0037.1380.nd Lotus japonicus chr6.CM0037.1380.nd I 0.625
Ciclev10008269m.g Citrus clementina Ciclev10008269m.g I 0.629
Ciclev10021319m.g Citrus clementina Ciclev10021319m.g I 0.642
Cla011684 Citrullus lanatus Cla011684 I 0.782
Cla021211 Citrullus lanatus Cla021211 I 0.606
Cla021315 Citrullus lanatus Cla021315 I 0.629
Cla022688 Citrullus lanatus Cla022688 I 0.629
Cucsa.162660 Cucumis sativus Cucsa.162660 I 0.629
Cucsa.271780 Cucumis sativus Cucsa.271780 I 0.629
Cucsa.302660 Cucumis sativus Cucsa.302660 I 0.867
Cucsa.395320 Cucumis sativus Cucsa.395320 I 0.606
DAPPUDRAFT_314795 Daphnia pulex DAPPUDRAFT_314795 I 0.613
est_orfs.8_8268_4271518:3 Micromonas pusilla est_orfs.8_8268_4271518:3 I 0.613
Eucgr.C01686 Eucalyptus grandis Eucgr.C01686 I 0.629
Eucgr.C02727 Eucalyptus grandis Eucgr.C02727 I 0.629
Eucgr.D01935 Eucalyptus grandis Eucgr.D01935 I 0.642
EuGene.1100010071 Micromonas sp RCC299 EuGene.1100010071 I 0.631
evm.TU.supercontig_187.27 Carica papaya evm.TU.supercontig_187.27 I 0.629
evm.TU.supercontig_46.88 Carica papaya evm.TU.supercontig_46.88 I 0.625
e_gw1.77.85.1 Physcomitrella patens e_gw1.77.85.1 I 0.625
F775_31219 Aegilops tauschii F775_31219 I 0.608
fgenesh1_pg.C_Chr_04.0001000291 Ostreococcus tauri fgenesh1_pg.C_Chr_04.0001000291 I 0.625
fgenesh1_pm.chr_4_#_82 Ostreococcus RCC809 fgenesh1_pm.chr_4_#_82 I 0.615
fgenesh1_pm.scaffold_154000010 Physcomitrella patens fgenesh1_pm.scaffold_154000010 I 0.625
gene10994-v1.0-hybrid Fragaria vesca gene10994-v1.0-hybrid I 0.629
gene30834-v1.0-hybrid Fragaria vesca gene30834-v1.0-hybrid I 0.629
gene32356-v1.0-hybrid Fragaria vesca gene32356-v1.0-hybrid I 0.867
GLYMA0041S00360 Glycine max GLYMA0041S00360 I 0.606
GLYMA01G42410 Glycine max GLYMA01G42410 I 0.642
GLYMA04G06810 Glycine max GLYMA04G06810 I 0.629
GLYMA05G03650 Glycine max GLYMA05G03650 I 0.629
GLYMA06G06886 Glycine max GLYMA06G06886 I 0.629
GLYMA09G12820 Glycine max GLYMA09G12820 I 0.625
GLYMA11G02960 Glycine max GLYMA11G02960 I 0.642
GLYMA13G22530 Glycine max GLYMA13G22530 I 0.625
GLYMA14G10430 Glycine max GLYMA14G10430 I 0.606
GLYMA14G13750 Glycine max GLYMA14G13750 I 0.629
GLYMA17G11330 Glycine max GLYMA17G11330 I 0.625
GLYMA17G14180 Glycine max GLYMA17G14180 I 0.629
GLYMA17G32980 Glycine max GLYMA17G32980 I 0.629
Gorai.001G035700 Gossypium raimondii Gorai.001G035700 I 0.629
Gorai.003G163800 Gossypium raimondii Gorai.003G163800 I 0.782
Gorai.004G206600 Gossypium raimondii Gorai.004G206600 I 0.782
Gorai.008G242800 Gossypium raimondii Gorai.008G242800 I 0.642
Gorai.009G012300 Gossypium raimondii Gorai.009G012300 I 0.625
Gorai.009G060200 Gossypium raimondii Gorai.009G060200 I 0.629
Gorai.010G056100 Gossypium raimondii Gorai.010G056100 I 0.616
Gorai.010G117100 Gossypium raimondii Gorai.010G117100 I 0.629
Gorai.013G213900 Gossypium raimondii Gorai.013G213900 I 0.629
GRMZM2G060507 Zea mays GRMZM2G060507 I 0.607
GRMZM2G087741 Zea mays GRMZM2G087741 D 0.636
GRMZM2G159431 Zea mays GRMZM2G159431 I 0.620
GSMUA_Achr10G06000_001 Musa acuminata GSMUA_Achr10G06000_001 I 0.629
GSMUA_Achr1G03660_001 Musa acuminata GSMUA_Achr1G03660_001 I 0.824
GSMUA_Achr1G26000_001 Musa acuminata GSMUA_Achr1G26000_001 I 0.613
GSMUA_Achr3G13370_001 Musa acuminata GSMUA_Achr3G13370_001 I 0.617
GSMUA_Achr3G26230_001 Musa acuminata GSMUA_Achr3G26230_001 I 0.606
GSMUA_Achr4G20400_001 Musa acuminata GSMUA_Achr4G20400_001 I 0.613
GSMUA_Achr7G05170_001 Musa acuminata GSMUA_Achr7G05170_001 I 0.617
HMEL005588 Heliconius melpomene HMEL005588 I 0.613
HOS66 Oryza sativa OS03G0123500 D 0.621
KGM_17297 Danaus plexippus KGM_17297 I 0.613
KNAT1 Arabidopsis thaliana AT4G08150 I 0.606
KNAT1 Vitis vinifera VIT_18s0001g08380 I 0.606
KNAT1 Arabidopsis lyrata fgenesh2_kg.6__2861__AT4G08150.1 I 0.606
KNAT3 Arabidopsis thaliana AT5G25220 D 0.629
KNAT3 Arabidopsis lyrata fgenesh2_kg.6__2508__AT5G25220.1 I 0.629
KNAT4 Arabidopsis thaliana AT5G11060 D 0.629
KNAT4 Arabidopsis lyrata fgenesh2_kg.6__1072__AT5G11060.1 I 0.629
KNAT5 Arabidopsis thaliana AT4G32040 I 0.628
KNAT5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000752 I 0.628
KNAT7 Arabidopsis thaliana AT1G62990 D 0.627
KNAT7 Vitis vinifera VIT_02s0025g04630 I 0.780
KNAT7 Arabidopsis lyrata fgenesh2_kg.2__183__AT1G62990.1 I 0.627
LjSGA_075335.1 Lotus japonicus LjSGA_075335.1 I 0.629
LPERR03G01680 Leersia perrieri LPERR03G01680 I 0.621
LPERR08G08210 Leersia perrieri LPERR08G08210 I 0.629
Lus10001934.g Linum usitatissimum Lus10001934.g I 0.629
Lus10001941.g Linum usitatissimum Lus10001941.g I 0.629
Lus10003183.g Linum usitatissimum Lus10003183.g I 0.629
Lus10006291.g Linum usitatissimum Lus10006291.g I 0.629
Lus10017824.g Linum usitatissimum Lus10017824.g I 0.630
Lus10024485.g Linum usitatissimum Lus10024485.g I 0.867
MDP0000135063 Malus domestica MDP0000135063 I 0.629
MDP0000137501 Malus domestica MDP0000137501 I 0.629
MDP0000167286 Malus domestica MDP0000167286 I 0.629
MDP0000313776 Malus domestica MDP0000313776 I 0.782
MDP0000323095 Malus domestica MDP0000323095 I 0.629
mgf002324m Mimulus guttatus mgf002324m I 0.770
mgf005594m Mimulus guttatus mgf005594m I 0.613
mgf008059m Mimulus guttatus mgf008059m I 0.617
mgf009465m Mimulus guttatus mgf009465m I 0.613
mgf014368m Mimulus guttatus mgf014368m I 0.613
mgf015016m Mimulus guttatus mgf015016m I 0.613
mgf017901m Mimulus guttatus mgf017901m I 0.629
mgf023665m Mimulus guttatus mgf023665m I 0.629
mgf025072m Mimulus guttatus mgf025072m I 0.629
mgf025908m Mimulus guttatus mgf025908m I 0.629
MLOC_66788 Hordeum vulgare MLOC_66788 I 0.608
MTR_1g012960 Medicago truncatula MTR_1g012960 I 0.629
MTR_2g461240 Medicago truncatula MTR_2g461240 I 0.625
MTR_3g106400 Medicago truncatula MTR_3g106400 I 0.629
MTR_4g116545 Medicago truncatula MTR_4g116545 I 0.625
MTR_5g011070 Medicago truncatula MTR_5g011070 I 0.642
OB03G11790 Oryza brachyantha OB03G11790 I 0.772
OB08G18480 Oryza brachyantha OB08G18480 I 0.629
OBART03G01840 Oryza barthii OBART03G01840 I 0.772
OBART03G32690 Oryza barthii OBART03G32690 I 0.626
OBART08G09500 Oryza barthii OBART08G09500 I 0.629
OGLUM03G01790 Oryza glumaepatula OGLUM03G01790 I 0.621
OGLUM03G32330 Oryza glumaepatula OGLUM03G32330 I 0.626
OGLUM08G10220 Oryza glumaepatula OGLUM08G10220 I 0.629
OLONG_020200 Oryza longistaminata OLONG_020200 I 0.772
OMERI03G01780 Oryza meridionalis OMERI03G01780 I 0.621
OMERI03G29420 Oryza meridionalis OMERI03G29420 I 0.626
ONIVA03G01480 Oryza nivara ONIVA03G01480 I 0.772
ONIVA03G34200 Oryza nivara ONIVA03G34200 I 0.626
ONIVA10G10210 Oryza nivara ONIVA10G10210 I 0.629
OPUNC03G01680 Oryza punctata OPUNC03G01680 I 0.621
OPUNC03G29850 Oryza punctata OPUNC03G29850 I 0.626
OPUNC08G08730 Oryza punctata OPUNC08G08730 I 0.629
orange1.1g013045m.g Citrus sinensis orange1.1g013045m.g I 0.629
orange1.1g022056m.g Citrus sinensis orange1.1g022056m.g I 0.642
ORGLA03G0016000 Oryza glaberrima ORGLA03G0016000 I 0.621
ORGLA03G0270100 Oryza glaberrima ORGLA03G0270100 I 0.603
ORGLA03G0296100 Oryza glaberrima ORGLA03G0296100 I 0.626
ORGLA08G0081300 Oryza glaberrima ORGLA08G0081300 I 0.629
ORUFI03G01570 Oryza rufipogon ORUFI03G01570 I 0.772
ORUFI03G34060 Oryza rufipogon ORUFI03G34060 I 0.626
ORUFI08G10720 Oryza rufipogon ORUFI08G10720 I 0.629
OS08G0292900 Oryza sativa OS08G0292900 I 0.629
OSTLU_5313 Ostreococcus lucimarinus OSTLU_5313 I 0.625
Pavir.J39623 Panicum virgatum Pavir.J39623 I 0.771
PDK_20s1397241g001 Phoenix dactylifera PDK_20s1397241g001 I 0.629
PDK_20s1461121g001 Phoenix dactylifera PDK_20s1461121g001 I 0.613
PDK_20s1635431g001 Phoenix dactylifera PDK_20s1635431g001 I 0.607
PDK_20s1907321g001 Phoenix dactylifera PDK_20s1907321g001 I 0.613
PGSC0003DMG400007887 Solanum tuberosum PGSC0003DMG400007887 I 0.612
PGSC0003DMG400015622 Solanum tuberosum PGSC0003DMG400015622 I 0.629
PGSC0003DMG400022736 Solanum tuberosum PGSC0003DMG400022736 I 0.782
PGSC0003DMG400030737 Solanum tuberosum PGSC0003DMG400030737 I 0.629
PK02271.1 Cannabis sativa PK02271.1 I 0.782
PK15857.1 Cannabis sativa PK15857.1 I 0.629
PK25034.1 Cannabis sativa PK25034.1 D 0.647
Pm004674 Prunus mume Pm004674 I 0.629
Pm023742 Prunus mume Pm023742 I 0.867
Pm027656 Prunus mume Pm027656 I 0.629
POPTR_0001s08550 Populus trichocarpa POPTR_0001s08550 I 0.629
POPTR_0006s27560 Populus trichocarpa POPTR_0006s27560 I 0.642
POPTR_0018s02210 Populus trichocarpa POPTR_0018s02210 I 0.629
POPTR_0018s12200 Populus trichocarpa POPTR_0018s12200 I 0.625
PRUPE_ppa005712mg Prunus persica PRUPE_ppa005712mg I 0.629
PRUPE_ppa007698mg Prunus persica PRUPE_ppa007698mg I 0.629
PRUPE_ppa009464mg Prunus persica PRUPE_ppa009464mg I 0.867
SapurV1A.0282s0220 Salix purpurea SapurV1A.0282s0220 I 0.642
SapurV1A.0626s0210 Salix purpurea SapurV1A.0626s0210 I 0.625
SapurV1A.0984s0020 Salix purpurea SapurV1A.0984s0020 I 0.629
SapurV1A.1301s0010 Salix purpurea SapurV1A.1301s0010 I 0.629
Sb01g009460 Sorghum bicolor Sb01g009460 I 0.602
SELMODRAFT_159366 Selaginella moellendorffii SELMODRAFT_159366 I 0.641
SELMODRAFT_173857 Selaginella moellendorffii SELMODRAFT_173857 I 0.624
SELMODRAFT_448401 Selaginella moellendorffii SELMODRAFT_448401 I 0.641
SELMODRAFT_450988 Selaginella moellendorffii SELMODRAFT_450988 I 0.624
SELMODRAFT_451277 Selaginella moellendorffii SELMODRAFT_451277 I 0.624
SELMODRAFT_451281 Selaginella moellendorffii SELMODRAFT_451281 I 0.624
Si014568m.g Setaria italica Si014568m.g I 0.629
Si036193m.g Setaria italica Si036193m.g I 0.602
Si036727m.g Setaria italica Si036727m.g I 0.620
Solyc07g007120.2 Solanum lycopersicum Solyc07g007120.2 I 0.629
Solyc08g041820.2 Solanum lycopersicum Solyc08g041820.2 I 0.629
Solyc08g080120.2 Solanum lycopersicum Solyc08g080120.2 I 0.782
Solyc12g010410.1 Solanum lycopersicum Solyc12g010410.1 I 0.612
TCM_016150 Theobroma cacao TCM_016150 I 0.782
TCM_038269 Theobroma cacao TCM_038269 I 0.603
Thhalv10004250m.g Eutrema salsugineum Thhalv10004250m.g I 0.629
Thhalv10013773m.g Eutrema salsugineum Thhalv10013773m.g I 0.629
Thhalv10023617m.g Eutrema salsugineum Thhalv10023617m.g I 0.627
Thhalv10025443m.g Eutrema salsugineum Thhalv10025443m.g I 0.628
Thhalv10028724m.g Eutrema salsugineum Thhalv10028724m.g I 0.606
Traes_4AL_2334B226E Triticum aestivum Traes_4AL_2334B226E I 0.643
Traes_4BL_C5C94B24F Triticum aestivum Traes_4BL_C5C94B24F I 0.608
Traes_4DL_B6034D454 Triticum aestivum Traes_4DL_B6034D454 I 0.608
Traes_5AL_A66D34380 Triticum aestivum Traes_5AL_A66D34380 I 0.621
TRIUR3_25675 Triticum urartu TRIUR3_25675 I 0.608
VIT_04s0008g06130 Vitis vinifera VIT_04s0008g06130 I 0.629
VIT_11s0118g00800 Vitis vinifera VIT_11s0118g00800 I 0.625
VIT_17s0000g08710 Vitis vinifera VIT_17s0000g08710 I 0.606
XM_002308343.1 Populus trichocarpa POPTR_0006s20440 I 0.625