evm.TU.supercontig_85.56 (Carica papaya)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 evm.TU.supercontig_85.56 T228576_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT

AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.824 0.842
HAT2
M06929_2.00
Arabidopsis thaliana
NHAATGATTRN

NYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT2_colamp_a
0.801 0.860
HAT2
M06930_2.00
Arabidopsis thaliana
WNYAATCATWD

HWATGATTRNW
Dap-seq
OMalley et al.(2016)
HAT2_col_v31
0.801 0.860
HAT1
M02047_2.00
Arabidopsis thaliana
NMATGATTRN

NYAATCATKN
PBM
Weirauch et al.(2014)
pTH8107
0.801 0.825
HAT1
M06922_2.00
Arabidopsis thaliana
NHAATGATTRNNWDW

WHWNNYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT1_col_a
0.801 0.825
HAT1
M06923_2.00
Arabidopsis thaliana
NYAATCATTDN

NHAATGATTRN
Dap-seq
OMalley et al.(2016)
HAT1_colamp_a
0.801 0.825
ATHB-X
M06902_2.00
Arabidopsis thaliana
HHAATRATTRN

NYAATYATTDD
Dap-seq
OMalley et al.(2016)
ATHB18_col_a
0.773 0.684
ATHB-X
M06903_2.00
Arabidopsis thaliana
NYAATGATTRV

BYAATCATTRN
Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a
0.773 0.684
ATHB-4
M01065_2.00
Arabidopsis thaliana
NBMTGCATRNN

NNYATGCAKVN
PBM
Sullivan et al.(2014)
pTH8184
0.761 0.825
ATHB-4
M02042_2.00
Arabidopsis thaliana
NNWTNATTRN

NYAATNAWNN
PBM
Weirauch et al.(2014)
pTH8667
0.761 0.825
HAT3
M00728_2.00
Arabidopsis thaliana
DTGATTRV

BYAATCAH
PBM
Chang et al.(2013)
pTH7400
0.761 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_85.56 Homeodomain 176 232

Links

Other Homeodomain family TFs
Other Carica papaya TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.0757s0005 Capsella grandiflora Cagra.0757s0005 I 0.000
Carubv10015887m.g Capsella rubella Carubv10015887m.g I 0.000
GRMZM2G067743 Zea mays GRMZM2G067743 I 0.000
GRMZM5G893117 Zea mays GRMZM5G893117 I 0.000
Lus10008916.g Linum usitatissimum Lus10008916.g I 0.000
OB03G39940 Oryza brachyantha OB03G39940 I 0.000
Pavir.Aa00919 Panicum virgatum Pavir.Aa00919 I 0.000
SapurV1A.0260s0250 Salix purpurea SapurV1A.0260s0250 I 0.000