CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene19507-v1.0-hybrid
(
Fragaria vesca
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
gene19507-v1.0-hybrid
T228621_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KNAT6
M02037_2.00
Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN
PBM
Weirauch et al.(2014)
pTH7296
0.817
0.807
KNOX3_HORVU
M10790_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$KNOX3_01
0.813
0.877
GRMZM2G135447
M02139_2.00
Zea mays
DTGACRKS
SMYGTCAH
PBM
Weirauch et al.(2014)
pTH6328
0.769
0.825
GRMZM2G087741
M02138_2.00
Zea mays
NNTGACRKCN
NGMYGTCANN
PBM
Weirauch et al.(2014)
pTH5816
0.764
0.719
PK25034.1
M01254_2.00
Cannabis sativa
NNTGACRKBN
NVMYGTCANN
PBM
Lambert et al.(2019)
pTH11259
0.709
0.807
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna19507.1-v1.0-hybrid
Homeodomain
381
440
KRKKGKLPKEARQKLLDWWSRHYKWPYPSESQKLSLAESTGLDQKQINNWFINQRKRHWK
Links
Other
Homeodomain
family TFs
Other
Fragaria vesca
TFs
310 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy