Gorai.003G163800 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.003G163800 T228694_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK25034.1
M01254_2.00
Cannabis sativa
NNTGACRKBN

NVMYGTCANN
PBM
Lambert et al.(2019)
pTH11259
0.731 0.673
KNAT4
M01238_2.00
Arabidopsis thaliana
NNGACNNNN

NNNNGTCNN
PBM
Lambert et al.(2019)
pTH9968
0.714 0.827
KNAT3
M02051_2.00
Arabidopsis thaliana
NNNGACVBNN

NNVBGTCNNN
PBM
Weirauch et al.(2014)
pTH7600
0.714 0.827
KNAT7
M01064_2.00
Arabidopsis thaliana
TGACRKST

ASMYGTCA
PBM
Sullivan et al.(2014)
pTH9798
0.711 0.904
HOS66
M02156_2.00
Oryza sativa
NNNNDHNN

NNDHNNNN
PBM
Weirauch et al.(2014)
pTH8332
0.706 0.942
GRMZM2G087741
M02138_2.00
Zea mays
NNTGACRKCN

NGMYGTCANN
PBM
Weirauch et al.(2014)
pTH5816
0.636 0.692
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.003G163800.1 Homeodomain 229 283

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

315 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000011233 Ailuropoda melanoleuca ENSAMEG00000011233 I 0.000
ENSBTAP00000037032-D1 Bos grunniens ENSBTAP00000037032-D1 I 0.000
ZNF3 Bos taurus ENSBTAG00000007012 I 0.000
ZNF3 Callithrix jacchus ENSCJAG00000015656 I 0.000
ZNF3 Canis familiaris ENSCAFG00000018472 I 0.000
ZNF3 Cavia porcellus ENSCPOG00000010860 I 0.000
ENSCSAG00000017832 Chlorocebus sabaeus ENSCSAG00000017832 I 0.000
ZNF3 Dasypus novemcinctus ENSDNOG00000010382 I 0.000
Zfp113 Dipodomys ordii ENSDORG00000000945 I 0.000
ZNF3 Echinops telfairi ENSETEG00000002679 I 0.000
ZNF3 Equus caballus ENSECAG00000024649 I 0.000
ZNF3 Erinaceus europaeus ENSEEUG00000003422 I 0.000
ZNF3 Felis catus ENSFCAG00000003560 I 0.000
ZNF3 Homo sapiens ENSG00000166526 D 0.000
ENSSTOG00000028734 Ictidomys tridecemlineatus ENSSTOG00000028734 I 0.000
ZNF3 Loxodonta africana ENSLAFG00000014618 I 0.000
ENSP00000415358 Macaca fascicularis ENSP00000415358 I 0.000
ZNF3 Macaca mulatta ENSMMUG00000004021 I 0.000
ENSMEUG00000013213 Macropus eugenii ENSMEUG00000013213 I 0.000
ZNF3 Microcebus murinus ENSMICG00000003962 I 0.000
ZNF3 Monodelphis domestica ENSMODG00000004159 I 0.000
ENSMPUG00000010891 Mustela putorius furo ENSMPUG00000010891 I 0.000
Zfp113 Mus musculus ENSMUSG00000037007 I 0.000
ZNF3 Myotis lucifugus ENSMLUG00000004466 I 0.000
ZNF3 Ochotona princeps ENSOPRG00000003308 I 0.000
ZNF3 Oryctolagus cuniculus ENSOCUG00000005390 I 0.000
ZNF3 Otolemur garnettii ENSOGAG00000006409 I 0.000
ENSOARG00000017937 Ovis aries ENSOARG00000017937 I 0.000
ZNF3 Pan troglodytes ENSPTRG00000019470 I 0.000
ENSPANG00000011255 Papio anubis ENSPANG00000011255 I 0.000
ENSPPYG00000017396 Pongo abelii ENSPPYG00000017396 I 0.000
ZNF3 Procavia capensis ENSPCAG00000015736 I 0.000
ZNF3 Pteropus vampyrus ENSPVAG00000005182 I 0.000
Zfp113 Rattus norvegicus ENSRNOG00000001341 I 0.000
ENSSHAG00000011938 Sarcophilus harrisii ENSSHAG00000011938 I 0.000
ZNF3 Tupaia belangeri ENSTBEG00000013905 I 0.000
ZNF3 Tursiops truncatus ENSTTRG00000012311 I 0.000