Gorai.004G113700 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.004G113700 T228700_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND

HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.811 0.825
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN

NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.811 0.825
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV

BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.811 0.825
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG

CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.811 0.825
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD

HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.803 0.772
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW

WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.803 0.772
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN

NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.796 0.754
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN

NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.794 0.825
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR

YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.794 0.825
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN

NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.794 0.825
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT

AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.794 0.789
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW

WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.780 0.702
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN

NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.780 0.702
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV

BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.780 0.702
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN

NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.780 0.702
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN

NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.715 0.614
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN

NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.715 0.614
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH

DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.715 0.596
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN

NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.715 0.596
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD

HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.710 0.579
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN

NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.710 0.579
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.661 0.737
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.661 0.737
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.641 0.719
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.641 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G113700.1 Homeodomain 59 115
Gorai.004G113700.2 Homeodomain 55 111

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

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Name Species Gene ID Motif Evidence SR
Score
Action
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L596_g27101 Steinernema carpocapsae L596_g27101 N 0.000
L889_g29219 Steinernema feltiae L889_g29219 N 0.000
L898_g32387 Steinernema monticolum L898_g32387 N 0.000
OFLC_0000064401 Onchocerca flexuosa OFLC_0000064401 N 0.000