Gorai.009G002500 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.009G002500 T228763_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.630 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G002500.1 Homeodomain 495 551
Gorai.009G002500.2 Homeodomain 495 551
Gorai.009G002500.3 Homeodomain 495 551
Gorai.009G002500.4 Homeodomain 495 545
Gorai.009G002500.5 Homeodomain 495 551
Gorai.009G002500.6 Homeodomain 495 545

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.825
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.730
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.730
Pm008905 Prunus mume Pm008905 I 0.728
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.728
mgf003961m Mimulus guttatus mgf003961m I 0.723
orange1.1g006754m.g Citrus sinensis orange1.1g006754m.g N 0.710
Ciclev10007587m.g Citrus clementina Ciclev10007587m.g N 0.710
29671.m000294 Ricinus communis 29671.m000294 I 0.709
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.708
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.707
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.684
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.684
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.677
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.675
PRH Arabidopsis thaliana AT4G29940 I 0.668
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.668
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.668
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.654
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.654
Bra010310 Brassica rapa Bra010310 I 0.644
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.644
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.644
Bo3g175850 Brassica oleracea Bo3g175850 I 0.644
Solyc07g008730.1 Solanum lycopersicum Solyc07g008730.1 I 0.633
PGSC0003DMG400028740 Solanum tuberosum PGSC0003DMG400028740 I 0.633
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.631
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.630
Bra011153 Brassica rapa Bra011153 I 0.622
Bo1g014710 Brassica oleracea Bo1g014710 I 0.614
Ca_08838 Cicer arietinum Ca_08838 I 0.608