Gorai.012G046200 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.012G046200 T228806_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZHD7
M02155_2.00
Oryza sativa
NNWAANNNNN

NNNNNTTWNN
PBM
Weirauch et al.(2014)
pTH6076
0.638 0.618
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.012G046200.1 Homeodomain 129 187

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZHD7 Oryza sativa OS02G0706600 D 0.638
GLYMA20G35690 Glycine max GLYMA20G35690 I 0.734
Ca_12172 Cicer arietinum Ca_12172 I 0.726
29983.m003297 Ricinus communis 29983.m003297 I 0.724
cassava39895.m1 Manihot esculenta cassava39895.m1 I 0.712
mgf024641m Mimulus guttatus mgf024641m I 0.678
mgf026503m Mimulus guttatus mgf026503m I 0.695
Carubv10028391m.g Capsella rubella Carubv10028391m.g I 0.649
Ciclev10027184m.g Citrus clementina Ciclev10027184m.g I 0.844
Eucgr.I00022 Eucalyptus grandis Eucgr.I00022 I 0.663
gene14755-v1.0-hybrid Fragaria vesca gene14755-v1.0-hybrid I 0.739
Lus10015900.g Linum usitatissimum Lus10015900.g I 0.691
MDP0000804580 Malus domestica MDP0000804580 I 0.761
Pavir.Aa00802 Panicum virgatum Pavir.Aa00802 I 0.659
Pavir.Ab02855 Panicum virgatum Pavir.Ab02855 I 0.637
Ca_02034 Cicer arietinum Ca_02034 I 0.740
SapurV1A.0185s0100 Salix purpurea SapurV1A.0185s0100 I 0.697
TCM_001660 Theobroma cacao TCM_001660 I 0.828
GRMZM2G069365 Zea mays GRMZM2G069365 I 0.659
LPERR02G24020 Leersia perrieri LPERR02G24020 I 0.638
MLOC_18998 Hordeum vulgare MLOC_18998 I 0.643
OGLUM02G30190 Oryza glumaepatula OGLUM02G30190 I 0.638
OMERI02G28440 Oryza meridionalis OMERI02G28440 I 0.638
OPUNC02G27120 Oryza punctata OPUNC02G27120 I 0.638
POPTR_0004s14270 Populus trichocarpa POPTR_0004s14270 I 0.697
PRUPE_ppa020272mg Prunus persica PRUPE_ppa020272mg I 0.750
Q0DYA2_ORYSJ Oryza sativa Q0DYA2_ORYSJ I 0.638
Sb04g030480 Sorghum bicolor Sb04g030480 I 0.659
SELMODRAFT_49899 Selaginella moellendorffii SELMODRAFT_49899 I 0.667
SELMODRAFT_59936 Selaginella moellendorffii SELMODRAFT_59936 I 0.667
Si020227m.g Setaria italica Si020227m.g I 0.660
Pavir.J22932 Panicum virgatum Pavir.J22932 N 0.618
Traes_4AL_5659286D11 Triticum aestivum Traes_4AL_5659286D11 N 0.617