Lus10004270.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10004270.g T228833_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW

WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.751 0.807
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN

NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.751 0.807
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV

BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.751 0.807
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN

NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.751 0.807
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND

HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.741 0.807
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN

NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.741 0.807
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV

BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.741 0.807
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG

CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.741 0.807
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD

HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.737 0.754
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW

WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.737 0.754
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN

NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.724 0.789
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT

AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.723 0.737
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN

NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.720 0.754
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR

YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.720 0.754
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN

NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.720 0.754
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN

NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.629 0.649
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN

NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.629 0.649
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH

DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.628 0.596
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN

NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.628 0.596
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD

HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.624 0.579
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN

NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.624 0.579
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.599 0.789
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.599 0.789
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10004270 Homeodomain 98 154

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

717 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK26157.1 Cannabis sativa PK26157.1 I 0.000
GLYMA14G24220 Glycine max GLYMA14G24220 I 0.000
Gorai.010G051900 Gossypium raimondii Gorai.010G051900 I 0.000
Gorai.005G088800 Gossypium raimondii Gorai.005G088800 I 0.000
MLOC_59162 Hordeum vulgare MLOC_59162 I 0.000
LPERR01G34090 Leersia perrieri LPERR01G34090 I 0.000
LPERR05G13490 Leersia perrieri LPERR05G13490 I 0.000
cassava28909.valid.m1 Manihot esculenta cassava28909.valid.m1 I 0.000
mgf013201m Mimulus guttatus mgf013201m I 0.000
GSMUA_Achr7G21780_001 Musa acuminata GSMUA_Achr7G21780_001 I 0.000
GSMUA_Achr4G02390_001 Musa acuminata GSMUA_Achr4G02390_001 I 0.000
OBART01G39590 Oryza barthii OBART01G39590 I 0.000
OB05G24820 Oryza brachyantha OB05G24820 I 0.000
OB01G48340 Oryza brachyantha OB01G48340 I 0.000
ORGLA05G0146600 Oryza glaberrima ORGLA05G0146600 I 0.000
ORGLA01G0334900 Oryza glaberrima ORGLA01G0334900 I 0.000
OGLUM01G43820 Oryza glumaepatula OGLUM01G43820 I 0.000
OGLUM05G17980 Oryza glumaepatula OGLUM05G17980 I 0.000
BGIOSGA000374 Oryza indica BGIOSGA000374 I 0.000
BGIOSGA019897 Oryza indica BGIOSGA019897 I 0.000
OMERI01G36460 Oryza meridionalis OMERI01G36460 I 0.000
ONIVA05G17670 Oryza nivara ONIVA05G17670 I 0.000
ONIVA01G44460 Oryza nivara ONIVA01G44460 I 0.000
OPUNC01G38300 Oryza punctata OPUNC01G38300 I 0.000
ORUFI01G42940 Oryza rufipogon ORUFI01G42940 I 0.000
NAC48 Oryza sativa OS01G0884300 D 0.000
Pavir.Ba03301 Panicum virgatum Pavir.Ba03301 I 0.000
Pavir.Bb00806 Panicum virgatum Pavir.Bb00806 I 0.000
Pavir.Ea03621 Panicum virgatum Pavir.Ea03621 I 0.000
Pavir.J25882 Panicum virgatum Pavir.J25882 N 0.000
Pavir.J36802 Panicum virgatum Pavir.J36802 N 0.000
Pavir.J38743 Panicum virgatum Pavir.J38743 N 0.000
Pavir.J21487 Panicum virgatum Pavir.J21487 N 0.000
e_gw1.117.35.1 Physcomitrella patens e_gw1.117.35.1 I 0.000
e_gw1.164.18.1 Physcomitrella patens e_gw1.164.18.1 I 0.000
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I 0.000
e_gw1.259.4.1 Physcomitrella patens e_gw1.259.4.1 I 0.000
e_gw1.164.26.1 Physcomitrella patens e_gw1.164.26.1 I 0.000
e_gw1.140.53.1 Physcomitrella patens e_gw1.140.53.1 I 0.000
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I 0.000
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I 0.000
Si030752m.g Setaria italica Si030752m.g I 0.000
Si032755m.g Setaria italica Si032755m.g N 0.000
Si002413m.g Setaria italica Si002413m.g I 0.000
Solyc11g017470.1 Solanum lycopersicum Solyc11g017470.1 I 0.000
Sb03g041920 Sorghum bicolor Sb03g041920 I 0.000
TCM_035160 Theobroma cacao TCM_035160 I 0.000
anac032 Vitis vinifera VIT_18s0001g02300 I 0.000
GRMZM2G014653 Zea mays GRMZM2G014653 I 0.000
GRMZM2G163843 Zea mays GRMZM2G163843 N 0.000
GRMZM2G475014 Zea mays GRMZM2G475014 I 0.000
GRMZM2G122615 Zea mays GRMZM2G122615 N 0.000