CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10004270.g
(
Linum usitatissimum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Lus10004270.g
T228833_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.751
0.807
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.751
0.807
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.751
0.807
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.751
0.807
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.741
0.807
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN
NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.741
0.807
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.741
0.807
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG
CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.741
0.807
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.737
0.754
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.737
0.754
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN
NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.724
0.789
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT
AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.723
0.737
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN
NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.720
0.754
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.720
0.754
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.720
0.754
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.629
0.649
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.629
0.649
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.628
0.596
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.628
0.596
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.624
0.579
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.624
0.579
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.599
0.789
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.599
0.789
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10004270
Homeodomain
98
154
PEKKRRLSVEQVQFLEKSFEVDNKLEPDRKVQLAKDLGLQPRQVAIWFQNRRGRWKT
Links
Other
Homeodomain
family TFs
Other
Linum usitatissimum
TFs
717 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PK26157.1
Cannabis sativa
PK26157.1
I
0.000
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.000
Gorai.010G051900
Gossypium raimondii
Gorai.010G051900
I
0.000
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.000
MLOC_59162
Hordeum vulgare
MLOC_59162
I
0.000
LPERR01G34090
Leersia perrieri
LPERR01G34090
I
0.000
LPERR05G13490
Leersia perrieri
LPERR05G13490
I
0.000
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.000
mgf013201m
Mimulus guttatus
mgf013201m
I
0.000
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
0.000
GSMUA_Achr4G02390_001
Musa acuminata
GSMUA_Achr4G02390_001
I
0.000
OBART01G39590
Oryza barthii
OBART01G39590
I
0.000
OB05G24820
Oryza brachyantha
OB05G24820
I
0.000
OB01G48340
Oryza brachyantha
OB01G48340
I
0.000
ORGLA05G0146600
Oryza glaberrima
ORGLA05G0146600
I
0.000
ORGLA01G0334900
Oryza glaberrima
ORGLA01G0334900
I
0.000
OGLUM01G43820
Oryza glumaepatula
OGLUM01G43820
I
0.000
OGLUM05G17980
Oryza glumaepatula
OGLUM05G17980
I
0.000
BGIOSGA000374
Oryza indica
BGIOSGA000374
I
0.000
BGIOSGA019897
Oryza indica
BGIOSGA019897
I
0.000
OMERI01G36460
Oryza meridionalis
OMERI01G36460
I
0.000
ONIVA05G17670
Oryza nivara
ONIVA05G17670
I
0.000
ONIVA01G44460
Oryza nivara
ONIVA01G44460
I
0.000
OPUNC01G38300
Oryza punctata
OPUNC01G38300
I
0.000
ORUFI01G42940
Oryza rufipogon
ORUFI01G42940
I
0.000
NAC48
Oryza sativa
OS01G0884300
D
0.000
Pavir.Ba03301
Panicum virgatum
Pavir.Ba03301
I
0.000
Pavir.Bb00806
Panicum virgatum
Pavir.Bb00806
I
0.000
Pavir.Ea03621
Panicum virgatum
Pavir.Ea03621
I
0.000
Pavir.J25882
Panicum virgatum
Pavir.J25882
N
0.000
Pavir.J36802
Panicum virgatum
Pavir.J36802
N
0.000
Pavir.J38743
Panicum virgatum
Pavir.J38743
N
0.000
Pavir.J21487
Panicum virgatum
Pavir.J21487
N
0.000
e_gw1.117.35.1
Physcomitrella patens
e_gw1.117.35.1
I
0.000
e_gw1.164.18.1
Physcomitrella patens
e_gw1.164.18.1
I
0.000
e_gw1.5.134.1
Physcomitrella patens
e_gw1.5.134.1
I
0.000
e_gw1.259.4.1
Physcomitrella patens
e_gw1.259.4.1
I
0.000
e_gw1.164.26.1
Physcomitrella patens
e_gw1.164.26.1
I
0.000
e_gw1.140.53.1
Physcomitrella patens
e_gw1.140.53.1
I
0.000
SapurV1A.3767s0010
Salix purpurea
SapurV1A.3767s0010
I
0.000
SapurV1A.0740s0040
Salix purpurea
SapurV1A.0740s0040
I
0.000
Si030752m.g
Setaria italica
Si030752m.g
I
0.000
Si032755m.g
Setaria italica
Si032755m.g
N
0.000
Si002413m.g
Setaria italica
Si002413m.g
I
0.000
Solyc11g017470.1
Solanum lycopersicum
Solyc11g017470.1
I
0.000
Sb03g041920
Sorghum bicolor
Sb03g041920
I
0.000
TCM_035160
Theobroma cacao
TCM_035160
I
0.000
anac032
Vitis vinifera
VIT_18s0001g02300
I
0.000
GRMZM2G014653
Zea mays
GRMZM2G014653
I
0.000
GRMZM2G163843
Zea mays
GRMZM2G163843
N
0.000
GRMZM2G475014
Zea mays
GRMZM2G475014
I
0.000
GRMZM2G122615
Zea mays
GRMZM2G122615
N
0.000