Lus10015400.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10015400.g T228868_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.855 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10015400 Homeodomain 43 99

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.866
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.866
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.866
MDP0000192108 Malus domestica MDP0000192108 I 0.866
Pm010098 Prunus mume Pm010098 I 0.866
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.866
Cla009803 Citrullus lanatus Cla009803 I 0.866
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.861
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.861
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.861
Ca_06343 Cicer arietinum Ca_06343 I 0.861
Ca_00337 Cicer arietinum Ca_00337 I 0.861
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.861
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.861
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.861
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.860
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.860
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.860
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.859
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.859
PK13272.1 Cannabis sativa PK13272.1 I 0.859
Bra032908 Brassica rapa Bra032908 I 0.859
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.859
Bo5g055970 Brassica oleracea Bo5g055970 I 0.858
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.857
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.857
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.857
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.855
RLT1 Arabidopsis thaliana AT1G28420 D 0.855
MDP0000288192 Malus domestica MDP0000288192 I 0.854
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.850
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.850
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.850
TCM_029805 Theobroma cacao TCM_029805 I 0.850
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.839
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.839
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.839
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.835
Bra010869 Brassica rapa Bra010869 I 0.826
mgf006858m Mimulus guttatus mgf006858m I 0.826
Bo3g143570 Brassica oleracea Bo3g143570 I 0.826
mgf006635m Mimulus guttatus mgf006635m I 0.807
30190.m011307 Ricinus communis 30190.m011307 I 0.798
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.777
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.723
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.687
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.687
OBART05G25730 Oryza barthii OBART05G25730 I 0.686
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.686
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.686
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.686
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.686
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.686
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.686
PK06068.1 Cannabis sativa PK06068.1 I 0.682
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.681
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.681
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.680
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.680
Ca_11272 Cicer arietinum Ca_11272 I 0.680
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.680
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.676
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.676
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.676
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.676
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.675
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.675
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.675
29983.m003128 Ricinus communis 29983.m003128 I 0.675
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.674
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.670
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.670
TCM_008214 Theobroma cacao TCM_008214 I 0.670
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.670
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.670
Bo7g067190 Brassica oleracea Bo7g067190 I 0.668
Bra033725 Brassica rapa Bra033725 I 0.667
RLT2 Arabidopsis thaliana AT5G44180 I 0.665
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.658
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.652
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.652
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.649
OS01G0672201 Oryza sativa OS01G0672201 I 0.648
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.648
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.648
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.648
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.648
OB01G35240 Oryza brachyantha OB01G35240 I 0.648
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.648
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.648
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.648
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.648
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.648
Si004333m.g Setaria italica Si004333m.g I 0.648
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.648
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.648
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.648
F775_01844 Aegilops tauschii F775_01844 I 0.647
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.647
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.647
Si020949m.g Setaria italica Si020949m.g I 0.642
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.642
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.642
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.640
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.640
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.640
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.640
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.638
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.638
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.632
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.626