Lus10037218.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10037218.g T228935_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-5
M06932_2.00
Arabidopsis thaliana
NYAATMATTND

HNAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_col_a
0.748 0.684
ATHB-5
M06933_2.00
Arabidopsis thaliana
NYAATMATTN

NAATKATTRN
Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a
0.748 0.684
ATHB-5
M02684_2.00
Arabidopsis thaliana
CAATVATTGVVSV

BSBBCAATBATTG
SELEX
Mathelier et al.(2014)
MA0110.2
0.748 0.684
ATHB-5
M10630_2.00
Arabidopsis thaliana
CAATVATTG

CAATBATTG
Transfac
Matys et al.(2006)
P$ATHB5_01
0.748 0.684
ATHB-13
M06900_2.00
Arabidopsis thaliana
HYAATAATTDD

HHAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB13_col_a
0.736 0.667
ATHB-13
M06901_2.00
Arabidopsis thaliana
NYAATAATTRW

WYAATTATTRN
Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a
0.736 0.667
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN

NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.730 0.719
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN

NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.730 0.684
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT

AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.730 0.684
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR

YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.730 0.684
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN

NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.730 0.684
HAT5
M06914_2.00
Arabidopsis thaliana
NHAATAATTDW

WHAATTATTDN
Dap-seq
OMalley et al.(2016)
HAT5_col_a
0.718 0.719
HAT5
M06915_2.00
Arabidopsis thaliana
WNYAATAATTRWDN

NHWYAATTATTRNW
Dap-seq
OMalley et al.(2016)
HAT5_colamp_a
0.718 0.719
HAT5
M02683_2.00
Arabidopsis thaliana
SCAATAATTNNV

BNNAATTATTGS
SELEX
Mathelier et al.(2014)
MA0008.2
0.718 0.719
HAT5
M10624_2.00
Arabidopsis thaliana
YSCAATAATTNNVN

NBNNAATTATTGSR
Transfac
Matys et al.(2006)
P$ATHB1_01
0.718 0.719
HB-5
M06924_2.00
Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH

DWWDNNNHMAATWATTGDTNN
Dap-seq
OMalley et al.(2016)
ATHB40_col_a
0.716 0.649
HB-5
M06925_2.00
Arabidopsis thaliana
HHAATWATTGDWNN

NNWHCAATWATTDD
Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a
0.716 0.649
ATHB-21
M06907_2.00
Arabidopsis thaliana
NNWHCAATWATTDN

NHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB21_col_a
0.716 0.614
ATHB-21
M06908_2.00
Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN

NNAHCAATWATTDNNNHHWW
Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a
0.716 0.614
ATHB-53
M06934_2.00
Arabidopsis thaliana
HMAATAATTRD

HYAATTATTKD
Dap-seq
OMalley et al.(2016)
ATHB53_col_a
0.716 0.632
ATHB-53
M06935_2.00
Arabidopsis thaliana
NNWHCAATWATTDDN

NHHAATWATTGDWNN
Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a
0.716 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10037218 Homeodomain 66 122

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

736 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK00315.1 Cannabis sativa PK00315.1 D 0.000
AtbZIP52 Arabidopsis thaliana AT1G06850 D 0.000
BZIP18 Arabidopsis thaliana AT2G40620 D 0.000
PK16335.1 Cannabis sativa PK16335.1 D 0.000
Bostr.25219s0275 Boechera stricta Bostr.25219s0275 I 0.000
Aquca_045_00222 Aquilegia coerulea Aquca_045_00222 I 0.000
Aquca_004_00525 Aquilegia coerulea Aquca_004_00525 I 0.000
Traes_4DL_19DC0CA31 Triticum aestivum Traes_4DL_19DC0CA31 I 0.000
mgf007830m Mimulus guttatus mgf007830m I 0.000
Bostr.9345s0072 Boechera stricta Bostr.9345s0072 I 0.000
Cagra.1642s0027 Capsella grandiflora Cagra.1642s0027 I 0.000
Cagra.1671s0308 Capsella grandiflora Cagra.1671s0308 I 0.000
Carubv10009673m.g Capsella rubella Carubv10009673m.g I 0.000
Carubv10025182m.g Capsella rubella Carubv10025182m.g I 0.000
Ciclev10032076m.g Citrus clementina Ciclev10032076m.g I 0.000
Eucgr.G03135 Eucalyptus grandis Eucgr.G03135 I 0.000
Cucsa.143950 Cucumis sativus Cucsa.143950 I 0.000
Cucsa.118900 Cucumis sativus Cucsa.118900 I 0.000
cassava43674.valid.m1 Manihot esculenta cassava43674.valid.m1 I 0.000
AtbZIP52 Vitis vinifera VIT_06s0004g08070 I 0.000
VIT_13s0067g02900 Vitis vinifera VIT_13s0067g02900 I 0.000
Ca_04108 Cicer arietinum Ca_04108 I 0.000
Ca_08929 Cicer arietinum Ca_08929 I 0.000
Ca_15657 Cicer arietinum Ca_15657 I 0.000
Cla007409 Citrullus lanatus Cla007409 I 0.000
Cla013626 Citrullus lanatus Cla013626 I 0.000
Pm000251 Prunus mume Pm000251 I 0.000
Pm019060 Prunus mume Pm019060 I 0.000
29729.m002363 Ricinus communis 29729.m002363 I 0.000
29804.m001495 Ricinus communis 29804.m001495 I 0.000
Eucgr.J00119 Eucalyptus grandis Eucgr.J00119 I 0.000
evm.TU.supercontig_19.62 Carica papaya evm.TU.supercontig_19.62 I 0.000
evm.TU.supercontig_2.298 Carica papaya evm.TU.supercontig_2.298 I 0.000
orange1.1g020026m.g Citrus sinensis orange1.1g020026m.g I 0.000
Pavir.Ba00224 Panicum virgatum Pavir.Ba00224 I 0.000
Pavir.Bb03755 Panicum virgatum Pavir.Bb03755 I 0.000
Pavir.Ib01574 Panicum virgatum Pavir.Ib01574 I 0.000
SapurV1A.0182s0020 Salix purpurea SapurV1A.0182s0020 I 0.000
SapurV1A.0215s0230 Salix purpurea SapurV1A.0215s0230 I 0.000
SapurV1A.3480s0020 Salix purpurea SapurV1A.3480s0020 I 0.000
SapurV1A.4004s0010 Salix purpurea SapurV1A.4004s0010 I 0.000
Thhalv10008146m.g Eutrema salsugineum Thhalv10008146m.g I 0.000
Thhalv10016819m.g Eutrema salsugineum Thhalv10016819m.g I 0.000
LjSGA_023972.1 Lotus japonicus LjSGA_023972.1 I 0.000
MDP0000305387 Malus domestica MDP0000305387 I 0.000
MDP0000297791 Malus domestica MDP0000297791 I 0.000
MDP0000210251 Malus domestica MDP0000210251 I 0.000
gene21344-v1.0-hybrid Fragaria vesca gene21344-v1.0-hybrid I 0.000
gene28103-v1.0-hybrid Fragaria vesca gene28103-v1.0-hybrid I 0.000
Gorai.009G293600 Gossypium raimondii Gorai.009G293600 I 0.000
Gorai.010G218700 Gossypium raimondii Gorai.010G218700 I 0.000
Gorai.011G209200 Gossypium raimondii Gorai.011G209200 I 0.000
Lus10008605.g Linum usitatissimum Lus10008605.g I 0.000
Lus10009907.g Linum usitatissimum Lus10009907.g I 0.000
Lus10012881.g Linum usitatissimum Lus10012881.g I 0.000
Lus10030531.g Linum usitatissimum Lus10030531.g I 0.000
Lus10042211.g Linum usitatissimum Lus10042211.g I 0.000
MDP0000129203 Malus domestica MDP0000129203 I 0.000
PDK_20s1367981g001 Phoenix dactylifera PDK_20s1367981g001 I 0.000
AtbZIP52 Arabidopsis lyrata Al_scaffold_0001_623 I 0.000
GLYMA02G40270 Glycine max GLYMA02G40270 I 0.000
GLYMA11G30940 Glycine max GLYMA11G30940 I 0.000
GLYMA14G38460 Glycine max GLYMA14G38460 I 0.000
GLYMA18G05880 Glycine max GLYMA18G05880 I 0.000
GRMZM2G062391 Zea mays GRMZM2G062391 I 0.000
GRMZM2G149040 Zea mays GRMZM2G149040 I 0.000
GRMZM2G151295 Zea mays GRMZM2G151295 I 0.000
GSMUA_Achr11G23650_001 Musa acuminata GSMUA_Achr11G23650_001 I 0.000
GSMUA_Achr2G18830_001 Musa acuminata GSMUA_Achr2G18830_001 I 0.000
GSMUA_AchrUn_randomG14020_001 Musa acuminata GSMUA_AchrUn_randomG14020_001 I 0.000
LPERR03G14390 Leersia perrieri LPERR03G14390 I 0.000
MLOC_44311 Hordeum vulgare MLOC_44311 I 0.000
fgenesh2_kg.4__2179__AT2G40620.1 Arabidopsis lyrata fgenesh2_kg.4__2179__AT2G40620.1 I 0.000
F775_32183 Aegilops tauschii F775_32183 I 0.000
AMTR_s00077p00070990 Amborella trichopoda AMTR_s00077p00070990 I 0.000
BGIOSGA012577 Oryza indica BGIOSGA012577 I 0.000
BGIOSGA023710 Oryza indica BGIOSGA023710 I 0.000
Bo4g012700 Brassica oleracea Bo4g012700 I 0.000
Bo4g190320 Brassica oleracea Bo4g190320 I 0.000
Bo8g007220 Brassica oleracea Bo8g007220 I 0.000
Bo8g114410 Brassica oleracea Bo8g114410 I 0.000
Bra016980 Brassica rapa Bra016980 I 0.000
Bra030663 Brassica rapa Bra030663 I 0.000
Bra031541 Brassica rapa Bra031541 I 0.000
BRADI1G17700 Brachypodium distachyon BRADI1G17700 I 0.000
F775_31774 Aegilops tauschii F775_31774 I 0.000
MLOC_60045 Hordeum vulgare MLOC_60045 I 0.000
MTR_3g094020 Medicago truncatula MTR_3g094020 I 0.000
MTR_3g467120 Medicago truncatula MTR_3g467120 I 0.000
POPTR_0019s15040 Populus trichocarpa POPTR_0019s15040 I 0.000
PRUPE_ppa006097mg Prunus persica PRUPE_ppa006097mg I 0.000
PRUPE_ppa007645mg Prunus persica PRUPE_ppa007645mg I 0.000
Sb02g042990 Sorghum bicolor Sb02g042990 I 0.000
Si030224m.g Setaria italica Si030224m.g I 0.000
Si036380m.g Setaria italica Si036380m.g I 0.000
Solyc06g048630.2 Solanum lycopersicum Solyc06g048630.2 I 0.000
TCM_042286 Theobroma cacao TCM_042286 I 0.000
TCM_045524 Theobroma cacao TCM_045524 I 0.000
Traes_2BS_1B0F27580 Triticum aestivum Traes_2BS_1B0F27580 I 0.000
Traes_2DS_93EAEC654 Triticum aestivum Traes_2DS_93EAEC654 I 0.000
Traes_4AS_45B416B25 Triticum aestivum Traes_4AS_45B416B25 I 0.000
POPTR_0013s15280 Populus trichocarpa POPTR_0013s15280 I 0.000
POPTR_0013s09350 Populus trichocarpa POPTR_0013s09350 I 0.000
MTR_5g075390 Medicago truncatula MTR_5g075390 I 0.000
OBART07G26390 Oryza barthii OBART07G26390 I 0.000
OGLUM07G26420 Oryza glumaepatula OGLUM07G26420 I 0.000
OMERI03G14760 Oryza meridionalis OMERI03G14760 I 0.000
ONIVA03G17500 Oryza nivara ONIVA03G17500 I 0.000
ONIVA07G26100 Oryza nivara ONIVA07G26100 I 0.000
OPUNC03G15960 Oryza punctata OPUNC03G15960 I 0.000
OPUNC07G24840 Oryza punctata OPUNC07G24840 I 0.000
ORUFI03G17050 Oryza rufipogon ORUFI03G17050 I 0.000
RF2B Oryza sativa OS03G0336200 I 0.000
PGSC0003DMG400016651 Solanum tuberosum PGSC0003DMG400016651 I 0.000
PGSC0003DMG400027599 Solanum tuberosum PGSC0003DMG400027599 I 0.000
Traes_4BL_9422485B3 Triticum aestivum Traes_4BL_9422485B3 I 0.000