MDP0000134241 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000134241 T228977_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.790 0.860
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.790 0.860
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.790 0.860
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.756 0.719
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.690 0.632
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.690 0.632
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.670 0.614
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.670 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000134241 Homeodomain 70 126

Links

Other Homeodomain family TFs
Other Malus domestica TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000738604 Malus domestica MDP0000738604 I 0.866
MDP0000119544 Malus domestica MDP0000119544 I 0.866
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.864
Pm026270 Prunus mume Pm026270 I 0.862
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.860
PK15535.1 Cannabis sativa PK15535.1 I 0.850
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.833
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.833
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.833
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.833
29815.m000499 Ricinus communis 29815.m000499 I 0.833
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.828
TCM_022391 Theobroma cacao TCM_022391 I 0.828
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.819
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.817
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.806
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.805
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.805
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.802
Cla018017 Citrullus lanatus Cla018017 I 0.802
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.801
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.801
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.801
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.798
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.798
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.798
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.798
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.797
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.797
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.797
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.795
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.790
mgf019824m Mimulus guttatus mgf019824m I 0.790
Bra009510 Brassica rapa Bra009510 I 0.790
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.790
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.790
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.790
Bo9g181720 Brassica oleracea Bo9g181720 I 0.790
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.790
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.790
Bo3g002560 Brassica oleracea Bo3g002560 I 0.786
Bo2g005230 Brassica oleracea Bo2g005230 I 0.774
mgf022748m Mimulus guttatus mgf022748m I 0.774
Bra028820 Brassica rapa Bra028820 I 0.774
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.771
Cla018641 Citrullus lanatus Cla018641 I 0.771
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.768
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.768
Ca_20151 Cicer arietinum Ca_20151 I 0.763
Bra005259 Brassica rapa Bra005259 I 0.756
Bo4g034490 Brassica oleracea Bo4g034490 I 0.756
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.756
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.754
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.751
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.748
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.748
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.745
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.718
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.697
TCM_018470 Theobroma cacao TCM_018470 I 0.690
29822.m003500 Ricinus communis 29822.m003500 I 0.690
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.690
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.690
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.690
Pm015861 Prunus mume Pm015861 I 0.690
Cla010510 Citrullus lanatus Cla010510 I 0.690
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.690
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.690
Ca_10527 Cicer arietinum Ca_10527 I 0.690
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.690
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.690
Bra008717 Brassica rapa Bra008717 I 0.690
Bra006285 Brassica rapa Bra006285 I 0.690
Bra023506 Brassica rapa Bra023506 I 0.690
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.690
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.690
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.690
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.690
Bo9g165360 Brassica oleracea Bo9g165360 I 0.690
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.690
HAT7 Arabidopsis thaliana AT5G15150 I 0.690
PK20392.1 Cannabis sativa PK20392.1 D 0.690
Bo2g012410 Brassica oleracea Bo2g012410 I 0.690
Bo3g010120 Brassica oleracea Bo3g010120 I 0.690
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.690
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.690
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.690
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.690
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.690
MDP0000737128 Malus domestica MDP0000737128 I 0.690
MDP0000124827 Malus domestica MDP0000124827 I 0.690
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.690
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.690
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.690
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.690
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.690
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.690
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.689
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.689
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.689
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.683
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.682
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.682
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.682
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.682
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.682
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.682
Si030983m.g Setaria italica Si030983m.g I 0.682
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.682
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.680
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.679
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.679
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.677
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.677
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.677
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.677
Ca_00750 Cicer arietinum Ca_00750 I 0.677
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.677
Pm018314 Prunus mume Pm018314 I 0.677
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.675
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.673
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.671
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.671
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.670
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.670
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.670
Bra039135 Brassica rapa Bra039135 I 0.670
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.670
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.670
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.670
Bo1g158730 Brassica oleracea Bo1g158730 I 0.670
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.669
Pm011328 Prunus mume Pm011328 I 0.667
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.667
Bo12274s010 Brassica oleracea Bo12274s010 I 0.666
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.665
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.665
29983.m003123 Ricinus communis 29983.m003123 I 0.665
MDP0000146339 Malus domestica MDP0000146339 I 0.665
Bo2g042250 Brassica oleracea Bo2g042250 I 0.661
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.661
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.661
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.661
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.661
Bra022687 Brassica rapa Bra022687 I 0.661
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.661
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.661
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.658
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.658
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.657
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.656
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.656
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.655
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.653
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.653
MDP0000311522 Malus domestica MDP0000311522 I 0.644
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.638
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.635
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.635
mgf013301m Mimulus guttatus mgf013301m I 0.635
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.635
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.635
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.635
TCM_031644 Theobroma cacao TCM_031644 I 0.635
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.635
MDP0000909160 Malus domestica MDP0000909160 I 0.634
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.628
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.625
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.623
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.623
mgf025174m Mimulus guttatus mgf025174m I 0.620
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.616
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.615
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.615
mgf014732m Mimulus guttatus mgf014732m I 0.614
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.614
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.611
Bo9g181710 Brassica oleracea Bo9g181710 I 0.611
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.611
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.611
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.611
Bo1g158930 Brassica oleracea Bo1g158930 I 0.606
Bra040519 Brassica rapa Bra040519 I 0.606
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.605
GSMUA_Achr3G06190_001 Musa acuminata GSMUA_Achr3G06190_001 I 0.602
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.601