MDP0000146339 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000146339 T228992_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.721 0.649
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.721 0.649
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.721 0.632
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.721 0.632
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.624 0.509
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.624 0.509
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.624 0.509
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.622 0.509
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.604 0.544
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.604 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000146339 Homeodomain 14 70

Links

Other Homeodomain family TFs
Other Malus domestica TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm011328 Prunus mume Pm011328 I 0.858
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.858
MDP0000909160 Malus domestica MDP0000909160 I 0.822
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.807
TCM_031644 Theobroma cacao TCM_031644 I 0.806
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.802
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.785
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.774
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.770
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.770
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.770
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.769
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.765
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.765
mgf013301m Mimulus guttatus mgf013301m I 0.743
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.733
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.733
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.723
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.723
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.721
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.721
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.721
TCM_018470 Theobroma cacao TCM_018470 I 0.721
PK20392.1 Cannabis sativa PK20392.1 D 0.721
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.721
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.721
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.721
MDP0000737128 Malus domestica MDP0000737128 I 0.721
MDP0000124827 Malus domestica MDP0000124827 I 0.721
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.721
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.721
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.721
Ca_10527 Cicer arietinum Ca_10527 I 0.721
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.721
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.721
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.721
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.721
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.721
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.721
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.721
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.721
Cla010510 Citrullus lanatus Cla010510 I 0.721
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.721
Pm015861 Prunus mume Pm015861 I 0.721
29822.m003500 Ricinus communis 29822.m003500 I 0.721
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.721
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.721
Bo1g158730 Brassica oleracea Bo1g158730 I 0.721
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.721
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.721
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.721
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.721
Bra039135 Brassica rapa Bra039135 I 0.721
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.721
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.721
Bo9g165360 Brassica oleracea Bo9g165360 I 0.720
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.720
Bra008717 Brassica rapa Bra008717 I 0.720
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.720
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.720
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.720
HAT7 Arabidopsis thaliana AT5G15150 I 0.720
Bo2g012410 Brassica oleracea Bo2g012410 I 0.720
Bra006285 Brassica rapa Bra006285 I 0.720
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.720
Bra023506 Brassica rapa Bra023506 I 0.720
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.720
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.720
Bo3g010120 Brassica oleracea Bo3g010120 I 0.720
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.717
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.717
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.717
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.714
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.711
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.705
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.703
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.699
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.695
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.695
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.695
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.695
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.695
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.692
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.689
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.687
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.686
Bo12274s010 Brassica oleracea Bo12274s010 I 0.685
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.685
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.683
Bra022687 Brassica rapa Bra022687 I 0.678
Bo2g042250 Brassica oleracea Bo2g042250 I 0.678
mgf025174m Mimulus guttatus mgf025174m I 0.678
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.676
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.674
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.674
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.674
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.674
Si030983m.g Setaria italica Si030983m.g I 0.674
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.674
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.673
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.670
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.670
Pm018314 Prunus mume Pm018314 I 0.670
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.667
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.667
PK15535.1 Cannabis sativa PK15535.1 I 0.665
MDP0000738604 Malus domestica MDP0000738604 I 0.665
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.665
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.665
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.665
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.665
MDP0000119544 Malus domestica MDP0000119544 I 0.665
MDP0000134241 Malus domestica MDP0000134241 I 0.665
Pm026270 Prunus mume Pm026270 I 0.665
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.665
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.665
TCM_022391 Theobroma cacao TCM_022391 I 0.665
29815.m000499 Ricinus communis 29815.m000499 I 0.665
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.665
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.665
Cla018641 Citrullus lanatus Cla018641 I 0.660
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.660
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.654
29983.m003123 Ricinus communis 29983.m003123 I 0.654
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.654
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.654
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.654
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.654
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.654
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.650
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.644
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.642
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.637
MDP0000311522 Malus domestica MDP0000311522 I 0.636
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.635
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.635
mgf022748m Mimulus guttatus mgf022748m I 0.635
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.635
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.634
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.634
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.634
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.634
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.634
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.634
Cla018017 Citrullus lanatus Cla018017 I 0.634
mgf019824m Mimulus guttatus mgf019824m I 0.634
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.634
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.633
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.633
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.630
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.627
Bo9g181720 Brassica oleracea Bo9g181720 I 0.624
Bra009510 Brassica rapa Bra009510 I 0.624
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.624
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.624
Bo2g005230 Brassica oleracea Bo2g005230 I 0.624
Bra028820 Brassica rapa Bra028820 I 0.624
Bo3g002560 Brassica oleracea Bo3g002560 I 0.624
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.624
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.624
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.624
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.624
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.624
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.624
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.624
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.623
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.622
Bo4g034490 Brassica oleracea Bo4g034490 I 0.622
Bra005259 Brassica rapa Bra005259 I 0.622
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.616
Ca_20151 Cicer arietinum Ca_20151 I 0.611
cassava46810.m1 Manihot esculenta cassava46810.m1 I 0.608
Bra018155 Brassica rapa Bra018155 I 0.608
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.604
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.604
Bo8g097390 Brassica oleracea Bo8g097390 I 0.604
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.604
Bra007637 Brassica rapa Bra007637 I 0.604
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.604
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.604