MDP0000288192 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000288192 T229060_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.843 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000288192 Homeodomain 439 495

Links

Other Homeodomain family TFs
Other Malus domestica TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.855
Pm010098 Prunus mume Pm010098 I 0.855
MDP0000192108 Malus domestica MDP0000192108 I 0.855
Cla009803 Citrullus lanatus Cla009803 I 0.855
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.855
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.855
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.855
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.854
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.854
Ca_00337 Cicer arietinum Ca_00337 I 0.850
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.850
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.850
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.850
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.850
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.850
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.850
Ca_06343 Cicer arietinum Ca_06343 I 0.850
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.849
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.848
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.848
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.848
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.848
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.848
PK13272.1 Cannabis sativa PK13272.1 I 0.848
Bo5g055970 Brassica oleracea Bo5g055970 I 0.847
Bra032908 Brassica rapa Bra032908 I 0.846
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.846
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.846
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.846
RLT1 Arabidopsis thaliana AT1G28420 D 0.843
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.839
TCM_029805 Theobroma cacao TCM_029805 I 0.839
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.839
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.839
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.828
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.826
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.826
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.823
Bo3g143570 Brassica oleracea Bo3g143570 I 0.815
Bra010869 Brassica rapa Bra010869 I 0.815
mgf006858m Mimulus guttatus mgf006858m I 0.813
30190.m011307 Ricinus communis 30190.m011307 I 0.811
mgf006635m Mimulus guttatus mgf006635m I 0.796
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.778
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.712
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.676
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.676
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.676
29983.m003128 Ricinus communis 29983.m003128 I 0.676
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.676
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.676
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.675
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.675
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.675
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.675
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.674
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.674
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.674
OBART05G25730 Oryza barthii OBART05G25730 I 0.674
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.674
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.674
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.674
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.671
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.671
orange1.1g004454m.g Citrus sinensis orange1.1g004454m.g I 0.671
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.671
PK06068.1 Cannabis sativa PK06068.1 I 0.671
TCM_008214 Theobroma cacao TCM_008214 I 0.671
Ca_11272 Cicer arietinum Ca_11272 I 0.669
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.669
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.669
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.669
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.668
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.668
Bo7g067190 Brassica oleracea Bo7g067190 I 0.668
Bra033725 Brassica rapa Bra033725 I 0.667
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.663
RLT2 Arabidopsis thaliana AT5G44180 I 0.652
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.647
Si020949m.g Setaria italica Si020949m.g I 0.643
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.642
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.642
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.641
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.641
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.641
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.641
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.640
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.640
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.639
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.639
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.638
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.637
OB01G35240 Oryza brachyantha OB01G35240 I 0.637
OS01G0672201 Oryza sativa OS01G0672201 I 0.637
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.637
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.637
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.637
Si004333m.g Setaria italica Si004333m.g I 0.637
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.637
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.637
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.637
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.637
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.637
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.637
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.637
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.637
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.635
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.635
F775_01844 Aegilops tauschii F775_01844 I 0.635
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.633
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.615