orange1.1g000279m.g (Citrus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 orange1.1g000279m.g T229128_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RLT1
M02038_2.00
Arabidopsis thaliana
NDHTCWWN

NWWGADHN
PBM
Weirauch et al.(2014)
pTH5432
0.855 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g000279m Homeodomain 33 89
orange1.1g000281m Homeodomain 33 89
orange1.1g000285m Homeodomain 33 89
orange1.1g000448m Homeodomain 33 89

Links

Other Homeodomain family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action