orange1.1g004454m.g (Citrus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 orange1.1g004454m.g T229140_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RLT1
M02038_2.00
Arabidopsis thaliana
NDHTCWWN

NWWGADHN
PBM
Weirauch et al.(2014)
pTH5432
0.668 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g004454m Homeodomain 22 78

Links

Other Homeodomain family TFs
Other Citrus sinensis TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_01844 Aegilops tauschii F775_01844 I 0.631
AMTR_s00058p00137050 Amborella trichopoda AMTR_s00058p00137050 I 0.790
Aquca_051_00028 Aquilegia coerulea Aquca_051_00028 I 0.812
HB-1 Arabidopsis lyrata fgenesh2_kg.1__3015__AT1G28420.1 I 0.668
fgenesh2_kg.8__392__AT5G44180.1 Arabidopsis lyrata fgenesh2_kg.8__392__AT5G44180.1 I 0.811
RLT2 Arabidopsis thaliana AT5G44180 I 0.794
RLT1 Arabidopsis thaliana AT1G28420 D 0.668
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.608
Bostr.3148s0041 Boechera stricta Bostr.3148s0041 I 0.811
Bostr.15697s0165 Boechera stricta Bostr.15697s0165 I 0.669
BRADI2G46230 Brachypodium distachyon BRADI2G46230 I 0.631
BRADI2G16647 Brachypodium distachyon BRADI2G16647 I 0.634
Bo7g067190 Brassica oleracea Bo7g067190 I 0.822
Bo9g006450 Brassica oleracea Bo9g006450 I 0.604
Bo5g055970 Brassica oleracea Bo5g055970 I 0.667
Bo3g143570 Brassica oleracea Bo3g143570 I 0.667
Bra034196 Brassica rapa Bra034196 I 0.604
Bra033725 Brassica rapa Bra033725 I 0.821
Bra032908 Brassica rapa Bra032908 I 0.667
Bra010869 Brassica rapa Bra010869 I 0.667
PK13272.1 Cannabis sativa PK13272.1 I 0.669
PK06068.1 Cannabis sativa PK06068.1 I 0.846
Cagra.0381s0009 Capsella grandiflora Cagra.0381s0009 I 0.810
Cagra.1822s0015 Capsella grandiflora Cagra.1822s0015 I 0.668
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.608
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.608
Carubv10025737m.g Capsella rubella Carubv10025737m.g I 0.810
evm.TU.supercontig_83.97 Carica papaya evm.TU.supercontig_83.97 I 0.660
evm.TU.supercontig_27.2 Carica papaya evm.TU.supercontig_27.2 I 0.675
Ca_06343 Cicer arietinum Ca_06343 I 0.671
Ca_21400 Cicer arietinum Ca_21400 I 0.657
Ca_11272 Cicer arietinum Ca_11272 I 0.811
Ca_00337 Cicer arietinum Ca_00337 I 0.671
Cla008712 Citrullus lanatus Cla008712 I 0.671
Cla009803 Citrullus lanatus Cla009803 I 0.671
Ciclev10014023m.g Citrus clementina Ciclev10014023m.g I 0.671
Ciclev10014022m.g Citrus clementina Ciclev10014022m.g I 0.867
orange1.1g000279m.g Citrus sinensis orange1.1g000279m.g I 0.671
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.661
Cucsa.046480 Cucumis sativus Cucsa.046480 I 0.671
Eucgr.D00596 Eucalyptus grandis Eucgr.D00596 I 0.648
Eucgr.K01058 Eucalyptus grandis Eucgr.K01058 I 0.829
Thhalv10006543m.g Eutrema salsugineum Thhalv10006543m.g I 0.669
Thhalv10003131m.g Eutrema salsugineum Thhalv10003131m.g I 0.811
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.606
gene29752-v1.0-hybrid Fragaria vesca gene29752-v1.0-hybrid I 0.675
gene17756-v1.0-hybrid Fragaria vesca gene17756-v1.0-hybrid I 0.812
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.659
GLYMA13G30860 Glycine max GLYMA13G30860 I 0.675
GLYMA13G24370 Glycine max GLYMA13G24370 I 0.675
GLYMA06G44290 Glycine max GLYMA06G44290 I 0.789
GLYMA07G32180 Glycine max GLYMA07G32180 I 0.675
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.659
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.659
Gorai.008G155100 Gossypium raimondii Gorai.008G155100 I 0.825
Gorai.010G243500 Gossypium raimondii Gorai.010G243500 I 0.655
Gorai.010G256900 Gossypium raimondii Gorai.010G256900 I 0.655
MLOC_62571 Hordeum vulgare MLOC_62571 I 0.631
LPERR01G22320 Leersia perrieri LPERR01G22320 I 0.637
LPERR05G21380 Leersia perrieri LPERR05G21380 I 0.670
Lus10013979.g Linum usitatissimum Lus10013979.g I 0.670
Lus10039870.g Linum usitatissimum Lus10039870.g I 0.793
Lus10025454.g Linum usitatissimum Lus10025454.g I 0.651
Lus10015325.g Linum usitatissimum Lus10015325.g I 0.651
Lus10015400.g Linum usitatissimum Lus10015400.g I 0.670
Lus10017688.g Linum usitatissimum Lus10017688.g N 0.735
Lus10018634.g Linum usitatissimum Lus10018634.g I 0.793
MDP0000207866 Malus domestica MDP0000207866 I 0.669
MDP0000192108 Malus domestica MDP0000192108 I 0.671
MDP0000288192 Malus domestica MDP0000288192 I 0.671
cassava43653.valid.m1 Manihot esculenta cassava43653.valid.m1 I 0.829
cassava1593.valid.m1 Manihot esculenta cassava1593.valid.m1 I 0.671
MTR_4g088375 Medicago truncatula MTR_4g088375 I 0.671
MTR_5g089870 Medicago truncatula MTR_5g089870 N 0.653
MTR_4g078860 Medicago truncatula MTR_4g078860 N 0.687
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.657
MTR_2g014490 Medicago truncatula MTR_2g014490 I 0.671
mgf006858m Mimulus guttatus mgf006858m I 0.638
mgf006635m Mimulus guttatus mgf006635m I 0.621
GSMUA_Achr6G26980_001 Musa acuminata GSMUA_Achr6G26980_001 I 0.765
OBART05G25730 Oryza barthii OBART05G25730 I 0.670
OB01G35240 Oryza brachyantha OB01G35240 I 0.637
ORGLA05G0222200 Oryza glaberrima ORGLA05G0222200 I 0.670
OGLUM05G27370 Oryza glumaepatula OGLUM05G27370 I 0.670
OGLUM01G29920 Oryza glumaepatula OGLUM01G29920 I 0.637
BGIOSGA004179 Oryza indica BGIOSGA004179 I 0.637
BGIOSGA022450 Oryza indica BGIOSGA022450 I 0.670
OMERI01G23740 Oryza meridionalis OMERI01G23740 I 0.637
ONIVA01G29520 Oryza nivara ONIVA01G29520 I 0.637
ONIVA05G27640 Oryza nivara ONIVA05G27640 I 0.670
OPUNC01G25990 Oryza punctata OPUNC01G25990 I 0.637
ORUFI05G27630 Oryza rufipogon ORUFI05G27630 I 0.670
ORUFI01G29060 Oryza rufipogon ORUFI01G29060 I 0.637
OS01G0672201 Oryza sativa OS01G0672201 I 0.637
Pavir.Ca00923 Panicum virgatum Pavir.Ca00923 I 0.655
Pavir.J20612 Panicum virgatum Pavir.J20612 I 0.655
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.716
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.672
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.641
POPTR_0007s01330 Populus trichocarpa POPTR_0007s01330 I 0.828
POPTR_0011s05660 Populus trichocarpa POPTR_0011s05660 I 0.660
POPTR_0017s04760 Populus trichocarpa POPTR_0017s04760 I 0.825
Pm010098 Prunus mume Pm010098 I 0.671
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.666
PRUPE_ppa000115mg Prunus persica PRUPE_ppa000115mg I 0.671
29983.m003128 Ricinus communis 29983.m003128 I 0.829
30190.m011307 Ricinus communis 30190.m011307 I 0.615
SapurV1A.0118s0310 Salix purpurea SapurV1A.0118s0310 I 0.828
SapurV1A.0032s0540 Salix purpurea SapurV1A.0032s0540 I 0.669
SapurV1A.0012s0660 Salix purpurea SapurV1A.0012s0660 I 0.671
SapurV1A.3547s0010 Salix purpurea SapurV1A.3547s0010 I 0.828
SapurV1A.3333s0010 Salix purpurea SapurV1A.3333s0010 I 0.828
SapurV1A.0693s0030 Salix purpurea SapurV1A.0693s0030 I 0.829
SELMODRAFT_422900 Selaginella moellendorffii SELMODRAFT_422900 I 0.754
SELMODRAFT_428998 Selaginella moellendorffii SELMODRAFT_428998 I 0.754
SELMODRAFT_447019 Selaginella moellendorffii SELMODRAFT_447019 I 0.808
SELMODRAFT_447089 Selaginella moellendorffii SELMODRAFT_447089 I 0.808
Si020949m.g Setaria italica Si020949m.g I 0.656
Si004333m.g Setaria italica Si004333m.g I 0.637
Solyc07g053610.2 Solanum lycopersicum Solyc07g053610.2 I 0.813
Solyc02g077660.2 Solanum lycopersicum Solyc02g077660.2 I 0.649
Sb03g030770 Sorghum bicolor Sb03g030770 I 0.633
Sb03g030782 Sorghum bicolor Sb03g030782 I 0.633
TCM_008214 Theobroma cacao TCM_008214 I 0.825
TCM_029805 Theobroma cacao TCM_029805 I 0.655
VIT_10s0003g00290 Vitis vinifera VIT_10s0003g00290 I 0.669
VIT_12s0028g03080 Vitis vinifera VIT_12s0028g03080 I 0.817
GRMZM2G060541 Zea mays GRMZM2G060541 I 0.637
GRMZM2G122750 Zea mays GRMZM2G122750 I 0.654
GRMZM2G159357 Zea mays GRMZM2G159357 I 0.637
GRMZM2G125294 Zea mays GRMZM2G125294 I 0.654