orange1.1g016887m.g (Citrus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 orange1.1g016887m.g T229152_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g016887m Homeodomain 11 76
orange1.1g017093m Homeodomain 11 76
orange1.1g018176m Homeodomain 6 55
orange1.1g024359m Homeodomain 11 76
orange1.1g024859m Homeodomain 11 76

Links

Other Homeodomain family TFs
Other Citrus sinensis TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10008640m.g Citrus clementina Ciclev10008640m.g N 0.867
Cucsa.032420 Cucumis sativus Cucsa.032420 N 0.855
POPTR_0174s00240 Populus trichocarpa POPTR_0174s00240 N 0.853
MTR_8g061040 Medicago truncatula MTR_8g061040 N 0.850
PRUPE_ppa007389mg Prunus persica PRUPE_ppa007389mg N 0.850
GLYMA12G18490 Glycine max GLYMA12G18490 N 0.849
GLYMA06G35561 Glycine max GLYMA06G35561 N 0.849
chr3.CM0282.620.nc Lotus japonicus chr3.CM0282.620.nc N 0.849
Lus10013684.g Linum usitatissimum Lus10013684.g N 0.845
Lus10017944.g Linum usitatissimum Lus10017944.g N 0.845
TCM_046875 Theobroma cacao TCM_046875 N 0.838
VIT_19s0014g01880 Vitis vinifera VIT_19s0014g01880 N 0.836
Gorai.013G172000 Gossypium raimondii Gorai.013G172000 N 0.834
Gorai.002G065900 Gossypium raimondii Gorai.002G065900 N 0.830
Bra022316 Brassica rapa Bra022316 N 0.815
Aquca_052_00043 Aquilegia coerulea Aquca_052_00043 N 0.812
evm.TU.supercontig_80.16 Carica papaya evm.TU.supercontig_80.16 N 0.806
SapurV1A.0083s0320 Salix purpurea SapurV1A.0083s0320 N 0.793
Pm011344 Prunus mume Pm011344 N 0.785
Eucgr.F01181 Eucalyptus grandis Eucgr.F01181 N 0.785
AMTR_s00011p00262800 Amborella trichopoda AMTR_s00011p00262800 N 0.781
PK03811.1 Cannabis sativa PK03811.1 N 0.774
POPTR_0011s09970 Populus trichocarpa POPTR_0011s09970 N 0.771
SapurV1A.0303s0100 Salix purpurea SapurV1A.0303s0100 N 0.771
Solyc10g007130.2 Solanum lycopersicum Solyc10g007130.2 N 0.769
AT3G18380 Arabidopsis thaliana AT3G18380 N 0.769
fgenesh2_kg.3__2039__AT3G18380.2 Arabidopsis lyrata fgenesh2_kg.3__2039__AT3G18380.2 N 0.769
gene27205-v1.0-hybrid Fragaria vesca gene27205-v1.0-hybrid N 0.765
MDP0000315095 Malus domestica MDP0000315095 N 0.762
MDP0000268133 Malus domestica MDP0000268133 N 0.762
Cagra.1681s0007 Capsella grandiflora Cagra.1681s0007 N 0.757
Carubv10014092m.g Capsella rubella Carubv10014092m.g N 0.757
Bostr.19424s0824 Boechera stricta Bostr.19424s0824 N 0.757
chr3.CM0282.640.nc Lotus japonicus chr3.CM0282.640.nc N 0.750
Traes_7DS_197A95728 Triticum aestivum Traes_7DS_197A95728 N 0.747
TRIUR3_19251 Triticum urartu TRIUR3_19251 N 0.747
MLOC_61712 Hordeum vulgare MLOC_61712 N 0.747
Bo5g118650 Brassica oleracea Bo5g118650 N 0.740
Bra037587 Brassica rapa Bra037587 N 0.734
Bo1g117640 Brassica oleracea Bo1g117640 N 0.734
OLONG_009306 Oryza longistaminata OLONG_009306 N 0.726
OS06G0485100 Oryza sativa OS06G0485100 N 0.726
ORUFI06G16210 Oryza rufipogon ORUFI06G16210 N 0.726
OBART06G15310 Oryza barthii OBART06G15310 N 0.726
LPERR06G11990 Leersia perrieri LPERR06G11990 N 0.726
BGIOSGA021223 Oryza indica BGIOSGA021223 N 0.726
OPUNC06G13990 Oryza punctata OPUNC06G13990 N 0.726
OMERI06G16500 Oryza meridionalis OMERI06G16500 N 0.726
BRADI1G42040 Brachypodium distachyon BRADI1G42040 N 0.725
GSMUA_Achr4G18450_001 Musa acuminata GSMUA_Achr4G18450_001 N 0.724
mgf014854m Mimulus guttatus mgf014854m N 0.711
30209.m001510 Ricinus communis 30209.m001510 N 0.710
Pavir.Ba02980 Panicum virgatum Pavir.Ba02980 N 0.654
Pavir.Bb01334 Panicum virgatum Pavir.Bb01334 N 0.654
Si030167m.g Setaria italica Si030167m.g N 0.654
OGLUM06G16330 Oryza glumaepatula OGLUM06G16330 N 0.653
GRMZM2G111204 Zea mays GRMZM2G111204 N 0.652
Sb02g020940 Sorghum bicolor Sb02g020940 N 0.650
GRMZM2G126170 Zea mays GRMZM2G126170 N 0.649
TTAC_0000456101 Hydatigera taeniaeformis TTAC_0000456101 N 0.639
A_08314 Schistosoma haematobium A_08314 N 0.630
Minc14799 Meloidogyne incognita Minc14799 N 0.626
WUBG_18725 Wuchereria bancrofti WUBG_18725 N 0.626
TsM_001096000 Taenia solium TsM_001096000 N 0.625
TASK_0000266001 Taenia asiatica TASK_0000266001 N 0.624
SMTD_0000662501 Schistosoma mattheei SMTD_0000662501 N 0.620
SMRZ_0000101601 Schistosoma margrebowiei SMRZ_0000101601 N 0.620
SCUD_0001900601 Schistosoma curassoni SCUD_0001900601 N 0.620
ECPE_0000616401 Echinostoma caproni ECPE_0000616401 N 0.620
PXEA_0003344501 Protopolystoma xenopodis PXEA_0003344501 N 0.620
snap_masked-nMf.1.1.scaf05842-processed-gene-0.7 Meloidogyne floridensis snap_masked-nMf.1.1.scaf05842-processed-gene-0.7 N 0.620
SPER_0002932401 Spirometra erinaceieuropaei SPER_0002932401 N 0.620
SMU15030938 Schmidtea mediterranea SMU15030938 N 0.620
TRE_0000664901 Trichobilharzia regenti TRE_0000664901 N 0.620
TRE_0000350801 Trichobilharzia regenti TRE_0000350801 N 0.620
DME_0000947201 Dracunculus medinensis DME_0000947201 N 0.620
ENSGALG00000020423 Gallus gallus ENSGALG00000020423 N 0.620
HHAL005220-PA Halyomorpha halys HHAL005220-PA N 0.620
SPER_0001728701 Spirometra erinaceieuropaei SPER_0001728701 N 0.617
ANCDUO_16102 Ancylostoma duodenale ANCDUO_16102 N 0.616
NECAME_04746 Necator americanus NECAME_04746 N 0.616
ANCCAN_19464 Ancylostoma caninum ANCCAN_19464 N 0.616
GM19280 Drosophila sechellia FBgn0174180 N 0.614
A_05161 Schistosoma haematobium A_05161 N 0.613
EVEC_0001374701 Enterobius vermicularis EVEC_0001374701 N 0.611
SMTD_0001595501 Schistosoma mattheei SMTD_0001595501 N 0.609
CpipJ_CPIJ015117 Culex pipiens CpipJ_CPIJ015117 N 0.609
AFAF003697 Anopheles farauti AFAF003697 N 0.609
AFUN006006 Anopheles funestus AFUN006006 N 0.609
AMIN003814 Anopheles minimus AMIN003814 N 0.609
AEPI008543 Anopheles epiroticus AEPI008543 N 0.609
ADIR002916 Anopheles dirus ADIR002916 N 0.609
SNAPOd2T00027099001 Oikopleura dioica SNAPOd2T00027099001 N 0.609
CPIJ015117 Culex quinquefasciatus CPIJ015117 N 0.609
YQE_02583 Dendroctonus ponderosae YQE_02583 N 0.609
SCUD_0000482001 Schistosoma curassoni SCUD_0000482001 I 0.609
AARA009718 Anopheles arabiensis AARA009718 N 0.609
TsM_000403100 Taenia solium TsM_000403100 N 0.609
ASTEI04299 Anopheles stephensi ASTEI04299 N 0.609
ACAC_0000669701 Angiostrongylus cantonensis ACAC_0000669701 N 0.609
ANCCAN_04049 Ancylostoma caninum ANCCAN_04049 I 0.609
ANCDUO_22747 Ancylostoma duodenale ANCDUO_22747 N 0.609
ANCCEY_01003 Ancylostoma ceylanicum ANCCEY_01003 I 0.609
Hba_19301 Heterorhabditis bacteriophora Hba_19301 N 0.609
Ocbimv22022773m.g Octopus bimaculoides Ocbimv22022773m.g I 0.609
PXEA_0001530801 Protopolystoma xenopodis PXEA_0001530801 N 0.609
PXEA_0000997401 Protopolystoma xenopodis PXEA_0000997401 N 0.609
L596_g19867 Steinernema carpocapsae L596_g19867 N 0.608
DICVIV_01479 Dictyocaulus viviparus DICVIV_01479 N 0.607
ANCCAN_14745 Ancylostoma caninum ANCCAN_14745 N 0.607
Hba_10254 Heterorhabditis bacteriophora Hba_10254 N 0.606
scaffold958-EXSNAP2012.2 Pristionchus exspectatus scaffold958-EXSNAP2012.2 N 0.603