CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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orange1.1g022713m.g
(
Citrus sinensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
orange1.1g022713m.g
T229160_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HAT22
M06926_2.00
Arabidopsis thaliana
NNYAATCATT
AATGATTRNN
Dap-seq
OMalley et al.(2016)
HAT22_col_a
0.862
0.930
HAT2
M06929_2.00
Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT2_colamp_a
0.793
0.789
ATHB-X
M06902_2.00
Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD
Dap-seq
OMalley et al.(2016)
ATHB18_col_a
0.746
0.736
ATHB-X
M06903_2.00
Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN
Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a
0.756
0.759
HAT2
M06930_2.00
Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW
Dap-seq
OMalley et al.(2016)
HAT2_col_v31
0.793
0.789
HAT1
M02047_2.00
Arabidopsis thaliana
NMATGATTRN
NYAATCATKN
PBM
Weirauch et al.(2014)
pTH8107
0.792
0.754
HAT1
M06922_2.00
Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN
Dap-seq
OMalley et al.(2016)
HAT1_col_a
0.792
0.754
HAT1
M06923_2.00
Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN
Dap-seq
OMalley et al.(2016)
HAT1_colamp_a
0.792
0.754
HAT3
M00728_2.00
Arabidopsis thaliana
DTGATTRV
BYAATCAH
PBM
Chang et al.(2013)
pTH7400
0.764
0.825
ATHB-4
M01065_2.00
Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN
PBM
Sullivan et al.(2014)
pTH8184
0.764
0.807
ATHB-4
M02042_2.00
Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN
PBM
Weirauch et al.(2014)
pTH8667
0.726
0.796
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g022713m
Homeodomain
147
203
ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL
orange1.1g028526m
Homeodomain
147
202
ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFH
orange1.1g029009m
Homeodomain
147
200
ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR
orange1.1g029106m
Homeodomain
147
199
ARKKLRLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNRRAR
Links
Other
Homeodomain
family TFs
Other
Citrus sinensis
TFs
696 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy