CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g040769m.g
(
Citrus sinensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
orange1.1g040769m.g
T229184_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN
NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.759
0.842
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.759
0.842
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.759
0.842
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.747
0.719
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.715
0.632
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN
NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.715
0.632
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.695
0.614
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.695
0.614
Q39944_HELAN
M10802_2.00
Helianthus annuus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HAHB4_01
0.609
0.474
estExt_gwp_gw1.C_70211
M02220_2.00
Physcomitrella patens
HMATNANDNN
NNHNTNATKD
PBM
Weirauch et al.(2014)
pTH8489
0.606
0.684
ATHB-16
M02050_2.00
Arabidopsis thaliana
YAATMATT
AATKATTR
PBM
Weirauch et al.(2014)
pTH7270
0.606
0.667
ATHB-6
M02040_2.00
Arabidopsis thaliana
HATNATTDN
NHAATNATD
PBM
Weirauch et al.(2014)
pTH7670
0.606
0.649
ATHB-6
M06909_2.00
Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN
Dap-seq
OMalley et al.(2016)
ATHB6_col_a
0.606
0.649
ATHB-6
M06910_2.00
Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN
Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a
0.606
0.649
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g040769m
Homeodomain
86
142
QERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS
Links
Other
Homeodomain
family TFs
Other
Citrus sinensis
TFs
301 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy