Pavir.Aa00802 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Aa00802 T229199_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZHD7
M02155_2.00 		Oryza sativa
NNWAANNNNN
NNNNNTTWNN		 PBM
Weirauch et al.(2014)
pTH6076 		0.829 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa00802.1.p Homeodomain 72 131

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si020227m.g Setaria italica Si020227m.g I 0.860
Sb04g030480 Sorghum bicolor Sb04g030480 I 0.852
GRMZM2G069365 Zea mays GRMZM2G069365 I 0.852
Pavir.Ab02855 Panicum virgatum Pavir.Ab02855 I 0.844
Q0DYA2_ORYSJ Oryza sativa Q0DYA2_ORYSJ I 0.829
ZHD7 Oryza sativa OS02G0706600 D 0.829
OMERI02G28440 Oryza meridionalis OMERI02G28440 I 0.829
LPERR02G24020 Leersia perrieri LPERR02G24020 I 0.829
OPUNC02G27120 Oryza punctata OPUNC02G27120 I 0.829
OGLUM02G30190 Oryza glumaepatula OGLUM02G30190 I 0.829
MLOC_18998 Hordeum vulgare MLOC_18998 I 0.825
SELMODRAFT_49899 Selaginella moellendorffii SELMODRAFT_49899 I 0.747
SELMODRAFT_59936 Selaginella moellendorffii SELMODRAFT_59936 I 0.747
cassava39895.m1 Manihot esculenta cassava39895.m1 I 0.730
29983.m003297 Ricinus communis 29983.m003297 I 0.730
SapurV1A.0185s0100 Salix purpurea SapurV1A.0185s0100 I 0.726
POPTR_0004s14270 Populus trichocarpa POPTR_0004s14270 I 0.726
Eucgr.I00022 Eucalyptus grandis Eucgr.I00022 I 0.694
Carubv10028391m.g Capsella rubella Carubv10028391m.g I 0.676
GLYMA20G35690 Glycine max GLYMA20G35690 I 0.659
Gorai.012G046200 Gossypium raimondii Gorai.012G046200 I 0.659
gene14755-v1.0-hybrid Fragaria vesca gene14755-v1.0-hybrid I 0.654
Ca_12172 Cicer arietinum Ca_12172 I 0.650
mgf026503m Mimulus guttatus mgf026503m I 0.650
Ca_02034 Cicer arietinum Ca_02034 I 0.643
Lus10015900.g Linum usitatissimum Lus10015900.g I 0.642
MDP0000804580 Malus domestica MDP0000804580 I 0.638
TCM_001660 Theobroma cacao TCM_001660 I 0.637
Ciclev10027184m.g Citrus clementina Ciclev10027184m.g I 0.637
PRUPE_ppa020272mg Prunus persica PRUPE_ppa020272mg I 0.627
mgf024641m Mimulus guttatus mgf024641m I 0.624
Traes_4AL_5659286D11 Triticum aestivum Traes_4AL_5659286D11 N 0.618
Pavir.J22932 Panicum virgatum Pavir.J22932 N 0.618