Pavir.Ba00249 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ba00249 T229211_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WOX11
M06916_2.00
Arabidopsis thaliana
ADTTAATTAVD

HBTAATTAAHT
Dap-seq
OMalley et al.(2016)
WOX11_col_a
0.841 0.930
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00249.1.p Homeodomain 17 78

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.867
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.867
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.867
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.867
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.867
OBART03G15820 Oryza barthii OBART03G15820 I 0.867
Si030836m.g Setaria italica Si030836m.g I 0.867
Si039112m.g Setaria italica Si039112m.g I 0.867
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.867
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.867
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.867
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.867
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.867
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.867
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.867
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.867
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.867
F775_22811 Aegilops tauschii F775_22811 I 0.867
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.867
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.867
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.867
OS03G0325600 Oryza sativa OS03G0325600 I 0.867
WOX6 Oryza indica BGIOSGA010824 I 0.867
OBART07G26670 Oryza barthii OBART07G26670 I 0.867
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.867
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.867
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.867
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.867
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.867
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.867
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.867
WOX11 Oryza sativa OS07G0684900 I 0.867
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.867
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.867
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.867
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.867
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.867
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.865
30072.m000927 Ricinus communis 30072.m000927 I 0.865
Ca_08180 Cicer arietinum Ca_08180 I 0.865
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.865
TCM_025805 Theobroma cacao TCM_025805 I 0.865
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.865
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.865
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.865
Ca_19701 Cicer arietinum Ca_19701 I 0.865
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.865
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.865
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.865
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.865
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.865
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.865
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.865
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.865
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.865
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.865
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.865
mgf016673m Mimulus guttatus mgf016673m I 0.865
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.865
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.863
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.856
MDP0000524885 Malus domestica MDP0000524885 I 0.852
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.852
MDP0000136426 Malus domestica MDP0000136426 I 0.852
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.852
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.846
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.845
Bo1g153650 Brassica oleracea Bo1g153650 I 0.842
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.842
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.842
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.842
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.842
Bra036446 Brassica rapa Bra036446 I 0.842
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.842
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.841
WOX11 Arabidopsis thaliana AT3G03660 D 0.841
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.840
Bra031980 Brassica rapa Bra031980 I 0.840
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.840
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.840
Bo5g148780 Brassica oleracea Bo5g148780 I 0.840
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.840
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.835
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.834
WOX12 Arabidopsis thaliana AT5G17810 I 0.833
Bra002108 Brassica rapa Bra002108 I 0.833
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.833
Bo9g159820 Brassica oleracea Bo9g159820 I 0.833
Pm025458 Prunus mume Pm025458 I 0.831
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.825
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.822
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.822
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.822
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.822
Si015065m.g Setaria italica Si015065m.g I 0.822
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.822
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.822
WOX10 Oryza sativa OS08G0242400 I 0.822
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.822
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.822
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.822
F775_11947 Aegilops tauschii F775_11947 I 0.822
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.822
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.822
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.822
WOX10 Oryza indica BGIOSGA027391 I 0.822
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.821
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.814
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.812
Bo2g013980 Brassica oleracea Bo2g013980 I 0.810
Bo2g062660 Brassica oleracea Bo2g062660 I 0.810
Bo11772s010 Brassica oleracea Bo11772s010 I 0.810
Bra023638 Brassica rapa Bra023638 I 0.810
mgf017527m Mimulus guttatus mgf017527m I 0.806
OB08G17020 Oryza brachyantha OB08G17020 I 0.800
Pavir.Ib01521 Panicum virgatum Pavir.Ib01521 I 0.783
OB10G14840 Oryza brachyantha OB10G14840 I 0.771
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.743
Si025013m.g Setaria italica Si025013m.g I 0.743
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.743
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.743
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.740
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.726
Bra022960 Brassica rapa Bra022960 I 0.726
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.726
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.726
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.726
OS01G0667450 Oryza sativa OS01G0667450 I 0.726
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.726
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.726
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.726
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.726
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.726
Bra005464 Brassica rapa Bra005464 I 0.726
mgf001579m Mimulus guttatus mgf001579m I 0.726
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.726
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.726
Bo3g027500 Brassica oleracea Bo3g027500 I 0.726
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.726
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.726
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.726
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.726
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.726
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.726
WOX9 Arabidopsis thaliana AT2G33880 I 0.726
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.726
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.726
Bo4g041330 Brassica oleracea Bo4g041330 I 0.726
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.726
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.726
MDP0000232004 Malus domestica MDP0000232004 I 0.726
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.726
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.726
MDP0000729328 Malus domestica MDP0000729328 I 0.726
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.726
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.726
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.726
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.726
OB01G35000 Oryza brachyantha OB01G35000 I 0.726
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.726
Ca_00357 Cicer arietinum Ca_00357 I 0.726
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.726
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.726
TCM_029776 Theobroma cacao TCM_029776 I 0.726
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.726
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.726
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.726
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.726
OBART01G25820 Oryza barthii OBART01G25820 I 0.726
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.726
29900.m001555 Ricinus communis 29900.m001555 I 0.726
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.726
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.726
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.726
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.726
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.726
Pm010370 Prunus mume Pm010370 I 0.726
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.726
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.726
Ca_06365 Cicer arietinum Ca_06365 I 0.726
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.726
Cla009819 Citrullus lanatus Cla009819 I 0.726
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.726
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.725
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.722
Si004249m.g Setaria italica Si004249m.g I 0.722
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.722
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.710
OBART05G25900 Oryza barthii OBART05G25900 I 0.710
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.710
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.710
F775_23099 Aegilops tauschii F775_23099 I 0.710
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.710
OS05G0564500 Oryza sativa OS05G0564500 I 0.710
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.710
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.710
Bra022008 Brassica rapa Bra022008 I 0.690
Bo2g127670 Brassica oleracea Bo2g127670 I 0.690
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.690
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.690
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.690
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.690
WOX8 Arabidopsis thaliana AT5G45980 I 0.685
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.670
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.670
MTR_4g088070 Medicago truncatula MTR_4g088070 I 0.653
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.651
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.651
Bo9g070070 Brassica oleracea Bo9g070070 I 0.642
Bra017448 Brassica rapa Bra017448 I 0.642
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.621
Thhalv10009654m.g Eutrema salsugineum Thhalv10009654m.g I 0.601
Bo8g106350 Brassica oleracea Bo8g106350 I 0.601
Bra026791 Brassica rapa Bra026791 I 0.601
SELMODRAFT_419270 Selaginella moellendorffii SELMODRAFT_419270 I 0.600
SELMODRAFT_417553 Selaginella moellendorffii SELMODRAFT_417553 I 0.600