Pavir.Ba01249 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ba01249 T229212_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.691 0.632
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.691 0.632
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.679 0.772
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.679 0.772
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.673 0.544
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.673 0.544
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.673 0.544
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.671 0.596
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.671 0.596
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.671 0.526
Q39944_HELAN
M10802_2.00
Helianthus annuus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HAHB4_01
0.654 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba01249.1.p Homeodomain 32 88

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.867
Si030983m.g Setaria italica Si030983m.g I 0.867
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.867
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.867
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.813
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.813
Pm018314 Prunus mume Pm018314 I 0.813
MDP0000311522 Malus domestica MDP0000311522 I 0.812
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.797
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.781
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.755
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.739
Ca_17608 Cicer arietinum Ca_17608 I 0.739
MDP0000316497 Malus domestica MDP0000316497 I 0.729
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.727
Cla018641 Citrullus lanatus Cla018641 I 0.714
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.714
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.714
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.712
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.710
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.710
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.710
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.708
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.706
Bo4g100070 Brassica oleracea Bo4g100070 I 0.706
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.706
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.706
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.705
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.705
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.705
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.703
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.703
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.703
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.700
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.698
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.698
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.697
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.694
Bra014417 Brassica rapa Bra014417 I 0.692
Cla010510 Citrullus lanatus Cla010510 I 0.691
Ca_10527 Cicer arietinum Ca_10527 I 0.691
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.691
MDP0000124827 Malus domestica MDP0000124827 I 0.691
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.691
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.691
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.691
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.691
TCM_018470 Theobroma cacao TCM_018470 I 0.691
PK20392.1 Cannabis sativa PK20392.1 D 0.691
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.691
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.691
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.691
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.691
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.691
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.691
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.691
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.691
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.691
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.691
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.691
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.691
MDP0000737128 Malus domestica MDP0000737128 I 0.691
29822.m003500 Ricinus communis 29822.m003500 I 0.691
Pm015861 Prunus mume Pm015861 I 0.691
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.691
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.691
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.691
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.690
Bra023506 Brassica rapa Bra023506 I 0.690
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.690
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.690
Bo9g165360 Brassica oleracea Bo9g165360 I 0.690
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.690
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.690
Bra006285 Brassica rapa Bra006285 I 0.690
HAT7 Arabidopsis thaliana AT5G15150 I 0.690
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.690
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.690
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.690
Bo3g010120 Brassica oleracea Bo3g010120 I 0.690
Bra008717 Brassica rapa Bra008717 I 0.690
Bo2g012410 Brassica oleracea Bo2g012410 I 0.690
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.684
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.684
mgf022748m Mimulus guttatus mgf022748m I 0.684
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.684
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.683
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.682
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.682
TCM_022391 Theobroma cacao TCM_022391 I 0.682
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.682
MDP0000134241 Malus domestica MDP0000134241 I 0.682
MDP0000119544 Malus domestica MDP0000119544 I 0.682
Pm026270 Prunus mume Pm026270 I 0.682
Cla018017 Citrullus lanatus Cla018017 I 0.682
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.682
29815.m000499 Ricinus communis 29815.m000499 I 0.682
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.682
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.682
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.682
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.682
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.682
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.682
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.682
mgf019824m Mimulus guttatus mgf019824m I 0.682
MDP0000738604 Malus domestica MDP0000738604 I 0.682
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.682
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.682
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.682
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.682
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.682
Ciclev10022365m.g Citrus clementina Ciclev10022365m.g I 0.681
VIT_15s0048g02870 Vitis vinifera VIT_15s0048g02870 I 0.681
SapurV1A.0162s0050 Salix purpurea SapurV1A.0162s0050 I 0.681
POPTR_0002s17680 Populus trichocarpa POPTR_0002s17680 I 0.681
SapurV1A.0003s0740 Salix purpurea SapurV1A.0003s0740 I 0.681
orange1.1g029280m.g Citrus sinensis orange1.1g029280m.g I 0.681
27964.m000347 Ricinus communis 27964.m000347 I 0.681
Ciclev10021877m.g Citrus clementina Ciclev10021877m.g I 0.680
orange1.1g025886m.g Citrus sinensis orange1.1g025886m.g I 0.680
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.679
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.679
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.679
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.679
Bo8g097390 Brassica oleracea Bo8g097390 I 0.679
Bra007637 Brassica rapa Bra007637 I 0.679
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.679
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.678
Gorai.007G111400 Gossypium raimondii Gorai.007G111400 I 0.676
cassava39514.m1 Manihot esculenta cassava39514.m1 I 0.676
evm.TU.supercontig_3.138 Carica papaya evm.TU.supercontig_3.138 I 0.675
Lus10008840.g Linum usitatissimum Lus10008840.g I 0.675
Lus10032952.g Linum usitatissimum Lus10032952.g I 0.675
MDP0000146339 Malus domestica MDP0000146339 I 0.674
Bo3g002560 Brassica oleracea Bo3g002560 I 0.673
Bo9g181720 Brassica oleracea Bo9g181720 I 0.673
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.673
POPTR_0014s09860 Populus trichocarpa POPTR_0014s09860 I 0.673
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.673
Bra009510 Brassica rapa Bra009510 I 0.673
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.673
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.673
Pm011328 Prunus mume Pm011328 I 0.673
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.673
TCM_031644 Theobroma cacao TCM_031644 I 0.673
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.673
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.673
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.673
evm.TU.supercontig_144.7 Carica papaya evm.TU.supercontig_144.7 I 0.672
TCM_005074 Theobroma cacao TCM_005074 I 0.672
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.671
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.671
Bo4g034490 Brassica oleracea Bo4g034490 I 0.671
Bra005259 Brassica rapa Bra005259 I 0.671
Bo1g158730 Brassica oleracea Bo1g158730 I 0.671
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.671
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.671
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.671
Bra039135 Brassica rapa Bra039135 I 0.671
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.671
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.671
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.670
PK15535.1 Cannabis sativa PK15535.1 I 0.670
Gorai.004G123500 Gossypium raimondii Gorai.004G123500 I 0.668
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.667
Gorai.004G123100 Gossypium raimondii Gorai.004G123100 I 0.666
MDP0000909160 Malus domestica MDP0000909160 I 0.666
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.665
mgf013301m Mimulus guttatus mgf013301m I 0.665
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.665
TCM_015486 Theobroma cacao TCM_015486 I 0.664
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.663
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.663
Bo2g005230 Brassica oleracea Bo2g005230 I 0.661
Bra028820 Brassica rapa Bra028820 I 0.661
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.658
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.658
Aquca_013_00021 Aquilegia coerulea Aquca_013_00021 I 0.657
Bo12274s010 Brassica oleracea Bo12274s010 I 0.654
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.654
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.654
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.654
Ca_00750 Cicer arietinum Ca_00750 I 0.651
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.651
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.651
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.651
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.650
PK15571.1 Cannabis sativa PK15571.1 I 0.649
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.646
BGIOSGA016852 Oryza indica BGIOSGA016852 I 0.644
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.644
OPUNC04G17950 Oryza punctata OPUNC04G17950 I 0.644
ONIVA04G18550 Oryza nivara ONIVA04G18550 I 0.644
Sb06g024000 Sorghum bicolor Sb06g024000 I 0.644
ORGLA04G0173700 Oryza glaberrima ORGLA04G0173700 I 0.644
Bra022687 Brassica rapa Bra022687 I 0.644
GRMZM2G396527 Zea mays GRMZM2G396527 I 0.644
GRMZM2G351330 Zea mays GRMZM2G351330 I 0.644
ORUFI04G21910 Oryza rufipogon ORUFI04G21910 I 0.644
Traes_2BL_B69300543 Triticum aestivum Traes_2BL_B69300543 I 0.644
Pavir.Ga00670 Panicum virgatum Pavir.Ga00670 I 0.644
LPERR04G16440 Leersia perrieri LPERR04G16440 I 0.644
cassava29430.valid.m1 Manihot esculenta cassava29430.valid.m1 I 0.644
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.644
F775_29232 Aegilops tauschii F775_29232 I 0.644
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.644
MLOC_70350 Hordeum vulgare MLOC_70350 I 0.644
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.644
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.644
Gorai.001G152200 Gossypium raimondii Gorai.001G152200 I 0.644
BRADI5G17170 Brachypodium distachyon BRADI5G17170 I 0.644
Si010550m.g Setaria italica Si010550m.g I 0.644
OGLUM04G20240 Oryza glumaepatula OGLUM04G20240 I 0.644
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.644
cassava29431.valid.m1 Manihot esculenta cassava29431.valid.m1 I 0.644
Bo2g042250 Brassica oleracea Bo2g042250 I 0.644
OBART04G20320 Oryza barthii OBART04G20320 I 0.644
OB04G27300 Oryza brachyantha OB04G27300 I 0.641
Lus10030214.g Linum usitatissimum Lus10030214.g I 0.640
TCM_015645 Theobroma cacao TCM_015645 I 0.639
cassava29803.valid.m1 Manihot esculenta cassava29803.valid.m1 I 0.634
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.632
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.632
mgf025174m Mimulus guttatus mgf025174m I 0.632
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.629
Cla002451 Citrullus lanatus Cla002451 I 0.629
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.629
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.629
29983.m003123 Ricinus communis 29983.m003123 I 0.629
MTR_3g092150 Medicago truncatula MTR_3g092150 I 0.627
GLYMA04G40960 Glycine max GLYMA04G40960 I 0.627
GLYMA06G13890 Glycine max GLYMA06G13890 I 0.627
Ca_04027 Cicer arietinum Ca_04027 I 0.627
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.623
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.622
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.622
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.622
AMTR_s00040p00235500 Amborella trichopoda AMTR_s00040p00235500 I 0.621
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.620
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.615
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.611
Gorai.008G128000 Gossypium raimondii Gorai.008G128000 I 0.610
mgf020022m Mimulus guttatus mgf020022m I 0.609
Ca_20151 Cicer arietinum Ca_20151 I 0.606
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.605
PDK_20s1318331g001 Phoenix dactylifera PDK_20s1318331g001 I 0.601
OGLUM02G26440 Oryza glumaepatula OGLUM02G26440 I 0.600
ORGLA02G0222500 Oryza glaberrima ORGLA02G0222500 I 0.600
HOX24 Oryza sativa OS02G0649300 I 0.600
GRMZM2G117164 Zea mays GRMZM2G117164 I 0.600
Sb04g033380 Sorghum bicolor Sb04g033380 I 0.600
Si018237m.g Setaria italica Si018237m.g I 0.600
Pavir.Ab02438 Panicum virgatum Pavir.Ab02438 I 0.600
ORUFI02G27420 Oryza rufipogon ORUFI02G27420 I 0.600
ONIVA02G28400 Oryza nivara ONIVA02G28400 I 0.600
OPUNC02G23740 Oryza punctata OPUNC02G23740 I 0.600
HOX24 Oryza indica BGIOSGA008720 I 0.600
OMERI02G25450 Oryza meridionalis OMERI02G25450 I 0.600