Pavir.Ea03245 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ea03245 T229246_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GRMZM2G038252
M02137_2.00
Zea mays
HTRATTGV

BCAATYAD
PBM
Weirauch et al.(2014)
pTH6141
0.867 0.982
WOX13
M02049_2.00
Arabidopsis thaliana
YTGATTGA

TCAATCAR
PBM
Weirauch et al.(2014)
pTH6461
0.854 0.860
WOX13
M00866_2.00
Arabidopsis thaliana
NNTGATTGAN

NTCAATCANN
PBM
Franco-Zorrilla et al.(2014)
WOX13
0.854 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea03245.1.p Homeodomain 89 150
Pavir.Ea03245.2.p Homeodomain 21 82

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

Invalid Input OrderBy

345 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action