CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Eb03234
(
Panicum virgatum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Pavir.Eb03234
T229257_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Eb03234.1.p
Homeodomain
89
136
RKSYHRHTAEQIKAMEAVFKESPHPDEQQRQQLSQELGLSARQVKFWQ
Links
Other
Homeodomain
family TFs
Other
Panicum virgatum
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra015119
Brassica rapa
Bra015119
N
0.733
VIT_13s0067g01580
Vitis vinifera
VIT_13s0067g01580
N
0.711
BGIOSGA000782
Oryza indica
BGIOSGA000782
N
0.689
OMERI01G28810
Oryza meridionalis
OMERI01G28810
N
0.689
VIT_14s0030g02130
Vitis vinifera
VIT_14s0030g02130
N
0.683
ONIVA08G05020
Oryza nivara
ONIVA08G05020
N
0.678
ORUFI08G05670
Oryza rufipogon
ORUFI08G05670
N
0.678
OPUNC08G04870
Oryza punctata
OPUNC08G04870
N
0.678
OGLUM08G05340
Oryza glumaepatula
OGLUM08G05340
N
0.678
BGIOSGA028102
Oryza indica
BGIOSGA028102
N
0.678
OBART08G05070
Oryza barthii
OBART08G05070
N
0.678
GSMUA_Achr8G07310_001
Musa acuminata
GSMUA_Achr8G07310_001
N
0.678
LPERR08G04930
Leersia perrieri
LPERR08G04930
N
0.678
GSMUA_Achr11G21700_001
Musa acuminata
GSMUA_Achr11G21700_001
N
0.674
Solyc09g060160.1
Solanum lycopersicum
Solyc09g060160.1
N
0.623