Pavir.Fa02028 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Fa02028 T229265_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa02028.1.p Homeodomain 1 43

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GSMUA_Achr3G23090_001 Musa acuminata GSMUA_Achr3G23090_001 N 0.867
gene23926-v1.0-hybrid Fragaria vesca gene23926-v1.0-hybrid N 0.844
PDK_20s1347391g002 Phoenix dactylifera PDK_20s1347391g002 N 0.844
GRMZM2G123140 Zea mays GRMZM2G123140 I 0.834
Traes_1DL_9FB53E48A Triticum aestivum Traes_1DL_9FB53E48A N 0.834
GRMZM2G004334 Zea mays GRMZM2G004334 N 0.824
OLONG_008306 Oryza longistaminata OLONG_008306 N 0.824
mgf006959m Mimulus guttatus mgf006959m N 0.824
POPTR_0012s03550 Populus trichocarpa POPTR_0012s03550 N 0.824
cassava13400.valid.m1 Manihot esculenta cassava13400.valid.m1 N 0.822
MDP0000690933 Malus domestica MDP0000690933 N 0.822
Carubv10007218m.g Capsella rubella Carubv10007218m.g N 0.818
OLONG_012459 Oryza longistaminata OLONG_012459 N 0.813
PGSC0003DMG400013263 Solanum tuberosum PGSC0003DMG400013263 N 0.811
Traes_6BL_4301B7F15 Triticum aestivum Traes_6BL_4301B7F15 N 0.800
Gorai.003G184900 Gossypium raimondii Gorai.003G184900 I 0.792
TCM_016582 Theobroma cacao TCM_016582 I 0.792
PDK_20s1410161g001 Phoenix dactylifera PDK_20s1410161g001 N 0.790
LjT36I04.40.nd Lotus japonicus LjT36I04.40.nd N 0.790
Traes_6DL_D722B6E13 Triticum aestivum Traes_6DL_D722B6E13 N 0.790
BRADI3G23370 Brachypodium distachyon BRADI3G23370 N 0.789
Ca_08015 Cicer arietinum Ca_08015 N 0.787
PGSC0003DMG400019030 Solanum tuberosum PGSC0003DMG400019030 N 0.784
OLONG_017944 Oryza longistaminata OLONG_017944 N 0.772
OS01G0788800 Oryza sativa OS01G0788800 N 0.772
F775_10961 Aegilops tauschii F775_10961 N 0.758
OMERI08G08060 Oryza meridionalis OMERI08G08060 N 0.743
gene25833-v1.0-hybrid Fragaria vesca gene25833-v1.0-hybrid N 0.734
BRADI2G50510 Brachypodium distachyon BRADI2G50510 N 0.734
Ca_19697 Cicer arietinum Ca_19697 N 0.718
GLYMA08G09430 Glycine max GLYMA08G09430 N 0.717
Bo1g131210 Brassica oleracea Bo1g131210 N 0.715
Traes_3AL_F42853DA5 Triticum aestivum Traes_3AL_F42853DA5 N 0.709
TRIUR3_32002 Triticum urartu TRIUR3_32002 N 0.698
TRAES3BF096700010CFD_g Triticum aestivum TRAES3BF096700010CFD_g N 0.685
Ocbimv22024994m.g Octopus bimaculoides Ocbimv22024994m.g N 0.683
TRAES3BF096700040CFD_g Triticum aestivum TRAES3BF096700040CFD_g N 0.679
augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 N 0.678
TRIUR3_29318 Triticum urartu TRIUR3_29318 N 0.677
ENSOCUG00000013528 Oryctolagus cuniculus ENSOCUG00000013528 I 0.674
Minc02159 Meloidogyne incognita Minc02159 N 0.673
ACAC_0000093601 Angiostrongylus cantonensis ACAC_0000093601 N 0.673
ACOC_0000334101 Angiostrongylus costaricensis ACOC_0000334101 N 0.673
GI23625 Drosophila mojavensis FBgn0146351 N 0.669
csin109617 Clonorchis sinensis csin109617 N 0.667
PGSC0003DMG400007775 Solanum tuberosum PGSC0003DMG400007775 N 0.664
SMTD_0001030501 Schistosoma mattheei SMTD_0001030501 N 0.663
ANCCEY_10891 Ancylostoma ceylanicum ANCCEY_10891 N 0.661
ENSPTRG00000017522 Pan troglodytes ENSPTRG00000017522 N 0.661
ANCCAN_27026 Ancylostoma caninum ANCCAN_27026 N 0.661
TLX3 Taeniopygia guttata ENSTGUG00000014966 N 0.661
VAX1 Loxodonta africana ENSLAFG00000018107 N 0.660
nRc.2.0.1.g21365 Romanomermis culicivorax nRc.2.0.1.g21365 N 0.659
YQE_10731 Dendroctonus ponderosae YQE_10731 N 0.655
SINV22981 Solenopsis invicta SINV22981 N 0.655
scaffold61-EXSNAP2012.75 Pristionchus exspectatus scaffold61-EXSNAP2012.75 N 0.655
AEPI010666 Anopheles epiroticus AEPI010666 N 0.654
AQUA015309 Anopheles quadriannulatus AQUA015309 N 0.654
ENSSHAG00000009294 Sarcophilus harrisii ENSSHAG00000009294 I 0.647
ENSTRUG00000017602 Takifugu rubripes ENSTRUG00000017602 N 0.647
PPA28666 Pristionchus pacificus PPA28666 N 0.647
LACBIDRAFT_243459 Laccaria bicolor LACBIDRAFT_243459 N 0.643
HelroG192586 Helobdella robusta HelroG192586 N 0.641
EMX1 Oryctolagus cuniculus ENSOCUG00000008208 N 0.641
PHUM118950 Pediculus humanus PHUM118950 N 0.641
nRc.2.0.1.g08298 Romanomermis culicivorax nRc.2.0.1.g08298 N 0.641
LDEC017208 Leptinotarsa decemlineata LDEC017208 N 0.641
AFAF006159 Anopheles farauti AFAF006159 I 0.640
SNAPOd2T00015975001 Oikopleura dioica SNAPOd2T00015975001 N 0.636
PHUM359910 Pediculus humanus PHUM359910 N 0.635
PHUM359880 Pediculus humanus PHUM359880 N 0.635
ACEP22770 Atta cephalotes ACEP22770 N 0.635
YQE_12889 Dendroctonus ponderosae YQE_12889 N 0.635
SMU15011671 Schmidtea mediterranea SMU15011671 I 0.635
Cmyd_10007464 Chelonia mydas Cmyd_10007464 I 0.635
Sjc_0085440 Schistosoma japonicum Sjc_0085440 N 0.635
nkx6-1 Xenopus tropicalis XB-GENE-483574 I 0.635
ACYPI086517 Acyrthosiphon pisum ACYPI086517 N 0.635
LDEC009173 Leptinotarsa decemlineata LDEC009173 N 0.635
AEPI002733 Anopheles epiroticus AEPI002733 N 0.635
ACUA011088 Anopheles culicifacies ACUA011088 N 0.635
RPRC003713 Rhodnius prolixus RPRC003713 N 0.635
MCINX004708 Melitaea cinxia MCINX004708 N 0.635
NKX6-1 Homo sapiens ENSG00000163623 D 0.635
tlx2 Danio rerio ENSDARG00000011273 I 0.635
ISCW010454 Ixodes scapularis ISCW010454 N 0.635
ISCW012145 Ixodes scapularis ISCW012145 N 0.635
BTMF_0001416601 Brugia timori BTMF_0001416601 N 0.635
ENSXMAG00000003902 Xiphophorus maculatus ENSXMAG00000003902 I 0.635
PXEA_0003635301 Protopolystoma xenopodis PXEA_0003635301 N 0.635
VAX2 Sus scrofa ENSSSCG00000008318 N 0.635
ENSTNIG00000016273 Tetraodon nigroviridis ENSTNIG00000016273 I 0.635
nDi.2.2.2.g10664 Dirofilaria immitis nDi.2.2.2.g10664 I 0.635
ENSOARG00000003161 Ovis aries ENSOARG00000003161 I 0.635
KGM_17085 Danaus plexippus KGM_17085 N 0.635
PPAI004705 Phlebotomus papatasi PPAI004705 N 0.635
AMIN006246 Anopheles minimus AMIN006246 N 0.635
TRE_0000385401 Trichobilharzia regenti TRE_0000385401 N 0.635
AMAM008009 Anopheles maculatus AMAM008009 N 0.635
MESCA006388 Megaselia scalaris MESCA006388 N 0.635
TCLT_0000655201 Thelazia callipaeda TCLT_0000655201 I 0.635
PPAI007203 Phlebotomus papatasi PPAI007203 N 0.635
SPER_0001142801 Spirometra erinaceieuropaei SPER_0001142801 I 0.635
PPAI006607 Phlebotomus papatasi PPAI006607 I 0.635
Tlx1 Mus musculus ENSMUSG00000025215 I 0.635
CLEC004114 Cimex lectularius CLEC004114 N 0.630
ENSPVAG00000007998 Pteropus vampyrus ENSPVAG00000007998 N 0.630
Alligator_sinensis_CCG004967.1 Alligator sinensis Alligator_sinensis_CCG004967.1 N 0.629
ENSOARG00000010209 Ovis aries ENSOARG00000010209 N 0.629
ENSFCAG00000025984 Felis catus ENSFCAG00000025984 N 0.629
ENSCSAG00000006765 Chlorocebus sabaeus ENSCSAG00000006765 N 0.629
ENSGALG00000020423 Gallus gallus ENSGALG00000020423 N 0.628
Tal_R011355 Tyto alba Tal_R011355 N 0.627
SPU_022574 Strongylocentrotus purpuratus SPU_022574 N 0.626
ACUA020431 Anopheles culicifacies ACUA020431 N 0.625
AEPI010384 Anopheles epiroticus AEPI010384 N 0.625
ACHR008505 Anopheles christyi ACHR008505 N 0.625
LDEC016573 Leptinotarsa decemlineata LDEC016573 N 0.623
ASTEI00742 Anopheles stephensi ASTEI00742 N 0.622
ENSCJAG00000004205 Callithrix jacchus ENSCJAG00000004205 I 0.622
K443DRAFT_111002 Laccaria amethystina K443DRAFT_111002 N 0.622
AFUN002980 Anopheles funestus AFUN002980 N 0.622
ASIM_0001450801 Anisakis simplex ASIM_0001450801 N 0.621
ASIM_0000060401 Anisakis simplex ASIM_0000060401 N 0.621
Cagra.1511s0010 Capsella grandiflora Cagra.1511s0010 N 0.621
GSMUA_Achr7G25990_001 Musa acuminata GSMUA_Achr7G25990_001 N 0.621
maker-nMf.1.1.scaf28435-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf28435-augustus-gene-0.3 N 0.619
A_05714 Schistosoma haematobium A_05714 N 0.618
ENSSHAG00000011988 Sarcophilus harrisii ENSSHAG00000011988 I 0.616
TRIUR3_33331 Triticum urartu TRIUR3_33331 N 0.616
M378DRAFT_56764 Amanita muscaria M378DRAFT_56764 N 0.616
NECAME_08983 Necator americanus NECAME_08983 N 0.615
HMEL006102 Heliconius melpomene HMEL006102 N 0.614
Smp_136900 Schistosoma mansoni Smp_136900 N 0.614
ANCCAN_19464 Ancylostoma caninum ANCCAN_19464 N 0.614
THITE_2107332 Thielavia terrestris THITE_2107332 I 0.613
NECAME_04746 Necator americanus NECAME_04746 N 0.613
BGIBMGA010052 Bombyx mori BGIBMGA010052 N 0.612
ANCDUO_16102 Ancylostoma duodenale ANCDUO_16102 N 0.612
Ogr19002 Ophisaurus gracilis Ogr19002 N 0.612
DICVIV_02944 Dictyocaulus viviparus DICVIV_02944 N 0.612
GRMZM2G381748 Zea mays GRMZM2G381748 N 0.612
SCUD_0000383301 Schistosoma curassoni SCUD_0000383301 N 0.611
Eucgr.D00184 Eucalyptus grandis Eucgr.D00184 I 0.611
OS04G0541700 Oryza sativa OS04G0541700 I 0.609
maker-nMf.1.1.scaf05303-snap-gene-0.8 Meloidogyne floridensis maker-nMf.1.1.scaf05303-snap-gene-0.8 N 0.609
ECPE_0000357901 Echinostoma caproni ECPE_0000357901 N 0.609
EEL_0000533501 Elaeophora elaphi EEL_0000533501 N 0.609
M437DRAFT_40473 Aureobasidium melanogenum M437DRAFT_40473 N 0.609
OBART02G26000 Oryza barthii OBART02G26000 I 0.609
Traes_2AL_BFB0C6D4C Triticum aestivum Traes_2AL_BFB0C6D4C I 0.609
Traes_1AS_CA75913B6 Triticum aestivum Traes_1AS_CA75913B6 N 0.608
TCNE_0000505101 Toxocara canis TCNE_0000505101 N 0.608
GPUH_0000797801 Gongylonema pulchrum GPUH_0000797801 N 0.608
chr5.CM0095.320.nd Lotus japonicus chr5.CM0095.320.nd N 0.607
DICVIV_01479 Dictyocaulus viviparus DICVIV_01479 N 0.607
BGLB006778 Biomphalaria glabrata BGLB006778 N 0.607
hoxc12a Gasterosteus aculeatus ENSGACG00000009391 N 0.607
ANCCAN_14745 Ancylostoma caninum ANCCAN_14745 N 0.607
GSTUM_00004451001 Tuber melanosporum GSTUM_00004451001 I 0.607
Ca_23643 Cicer arietinum Ca_23643 N 0.606
ENSECAG00000002506 Equus caballus ENSECAG00000002506 I 0.606
ANCCAN_11756 Ancylostoma caninum ANCCAN_11756 N 0.606
HMX2 Felis catus ENSFCAG00000023440 N 0.606
BTMF_0000546301 Brugia timori BTMF_0000546301 N 0.604
SPER_0001728701 Spirometra erinaceieuropaei SPER_0001728701 N 0.604
Cmyd_10012338 Chelonia mydas Cmyd_10012338 N 0.602
DME_0000044501 Dracunculus medinensis DME_0000044501 N 0.602
ENSOANG00000003475 Ornithorhynchus anatinus ENSOANG00000003475 I 0.601
HOXB2 Pan troglodytes ENSPTRG00000009352 I 0.601
CJA40511 Caenorhabditis japonica CJA40511 I 0.601
Tal_R008067 Tyto alba Tal_R008067 I 0.601
SBAD_0000495201 Soboliphyme baturini SBAD_0000495201 N 0.601
ENSPPYG00000018545 Pongo abelii ENSPPYG00000018545 N 0.601
SMRZ_0000903001 Schistosoma margrebowiei SMRZ_0000903001 N 0.601
NKX6-3 Homo sapiens ENSG00000165066 D 0.601
CLEC002615 Cimex lectularius CLEC002615 N 0.601
CPIJ001378 Culex quinquefasciatus CPIJ001378 N 0.601
ENSPANG00000014739 Papio anubis ENSPANG00000014739 N 0.601
LCUP008695 Lucilia cuprina LCUP008695 N 0.601
ENSACAG00000000961 Anolis carolinensis ENSACAG00000000961 N 0.601
HNAJ_0000607701 Hymenolepis nana HNAJ_0000607701 N 0.601
NKX6-3 Tursiops truncatus ENSTTRG00000003567 N 0.601
Bm8478 Brugia malayi Bm8478 N 0.601
T265_14387 Opisthorchis viverrini T265_14387 N 0.601
AMIN002696 Anopheles minimus AMIN002696 N 0.601
OLONG_017897 Oryza longistaminata OLONG_017897 I 0.601
AQUA009533 Anopheles quadriannulatus AQUA009533 N 0.601
CpipJ_CPIJ001378 Culex pipiens CpipJ_CPIJ001378 N 0.601
AMEM011598 Anopheles merus AMEM011598 N 0.601
AMEM007254 Anopheles merus AMEM007254 N 0.601
NKX6-3 Canis familiaris ENSCAFG00000005710 N 0.601
PPA04715 Pristionchus pacificus PPA04715 N 0.601
AARA004444 Anopheles arabiensis AARA004444 N 0.601
AMAM021430 Anopheles maculatus AMAM021430 N 0.601
AALB008451 Anopheles albimanus AALB008451 N 0.601
ADIR006385 Anopheles dirus ADIR006385 N 0.601
ENSMMUG00000014725 Macaca mulatta ENSMMUG00000014725 N 0.601
ENSPCAG00000005898 Procavia capensis ENSPCAG00000005898 N 0.601
Traes_2AL_AAEBFA9CC Triticum aestivum Traes_2AL_AAEBFA9CC N 0.601
SROB_0001009601 Schistosoma rodhaini SROB_0001009601 N 0.601
hoxb2.S Xenopus laevis XB-GENE-478530 I 0.601
LOAG_07462 Loa loa LOAG_07462 N 0.601
ENSMEUG00000015794 Macropus eugenii ENSMEUG00000015794 I 0.601
ENSACAG00000027662 Anolis carolinensis ENSACAG00000027662 I 0.601
ENSACAG00000005787 Anolis carolinensis ENSACAG00000005787 N 0.601
Traes_1DS_AAEBFA9CC Triticum aestivum Traes_1DS_AAEBFA9CC N 0.601
AATE009299 Anopheles atroparvus AATE009299 I 0.601
Hba_10254 Heterorhabditis bacteriophora Hba_10254 N 0.600
LOAG_18696 Loa loa LOAG_18696 N 0.600
HHAL004742-PA Halyomorpha halys HHAL004742-PA N 0.600
nOo.2.0.1.g12002 Onchocerca ochengi nOo.2.0.1.g12002 N 0.600
SVUK_0001081801 Strongylus vulgaris SVUK_0001081801 N 0.599
ANCCAN_04049 Ancylostoma caninum ANCCAN_04049 I 0.599
ISCW012461 Ixodes scapularis ISCW012461 N 0.599
ANCCAN_23849 Ancylostoma caninum ANCCAN_23849 N 0.599
ANCCAN_18983 Ancylostoma caninum ANCCAN_18983 N 0.599
TRAES3BF096700070CFD_g Triticum aestivum TRAES3BF096700070CFD_g N 0.599
ANCCEY_01003 Ancylostoma ceylanicum ANCCEY_01003 I 0.599
ANCCEY_10591 Ancylostoma ceylanicum ANCCEY_10591 N 0.599
HPBE_0002651601 Heligmosomoides bakeri HPBE_0002651601 N 0.599
ANCDUO_04800 Ancylostoma duodenale ANCDUO_04800 N 0.599
NECAME_11765 Necator americanus NECAME_11765 N 0.599
GRMZM2G118063 Zea mays GRMZM2G118063 I 0.496