Pavir.Hb01447 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Hb01447 T229284_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.668 0.526
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.668 0.526
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.648 0.491
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.648 0.491
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.643 0.456
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.643 0.456
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.643 0.456
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.636 0.439
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Hb01447.1.p Homeodomain 105 161

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.691
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.677
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.671
Pm015861 Prunus mume Pm015861 I 0.668
Ca_10527 Cicer arietinum Ca_10527 I 0.668
Cla010510 Citrullus lanatus Cla010510 I 0.668
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.668
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.668
TCM_018470 Theobroma cacao TCM_018470 I 0.668
29822.m003500 Ricinus communis 29822.m003500 I 0.668
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.668
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.668
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.668
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.668
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.668
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.668
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.668
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.668
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.668
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.668
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.668
MDP0000737128 Malus domestica MDP0000737128 I 0.668
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.668
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.668
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.668
PK20392.1 Cannabis sativa PK20392.1 D 0.668
MDP0000124827 Malus domestica MDP0000124827 I 0.668
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.668
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.668
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.668
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.668
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.668
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.668
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.668
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.668
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.668
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.668
Bra006285 Brassica rapa Bra006285 I 0.668
Bra008717 Brassica rapa Bra008717 I 0.668
Bra023506 Brassica rapa Bra023506 I 0.668
Bo3g010120 Brassica oleracea Bo3g010120 I 0.668
Bo2g012410 Brassica oleracea Bo2g012410 I 0.668
Bo9g165360 Brassica oleracea Bo9g165360 I 0.668
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.668
HAT7 Arabidopsis thaliana AT5G15150 I 0.668
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.668
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.665
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.665
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.665
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.663
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.662
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.662
Pm018314 Prunus mume Pm018314 I 0.662
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.658
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.658
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.658
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.658
Si030983m.g Setaria italica Si030983m.g I 0.658
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.658
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.658
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.658
Bo12274s010 Brassica oleracea Bo12274s010 I 0.657
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.655
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.655
mgf022748m Mimulus guttatus mgf022748m I 0.654
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.654
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.654
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.654
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.654
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.654
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.653
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.653
MDP0000119544 Malus domestica MDP0000119544 I 0.653
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.653
mgf019824m Mimulus guttatus mgf019824m I 0.653
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.653
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.653
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.653
MDP0000134241 Malus domestica MDP0000134241 I 0.653
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.653
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.653
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.653
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.653
Cla018017 Citrullus lanatus Cla018017 I 0.653
MDP0000738604 Malus domestica MDP0000738604 I 0.653
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.653
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.653
TCM_022391 Theobroma cacao TCM_022391 I 0.653
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.653
Pm026270 Prunus mume Pm026270 I 0.653
Cla018641 Citrullus lanatus Cla018641 I 0.653
29815.m000499 Ricinus communis 29815.m000499 I 0.653
PK15535.1 Cannabis sativa PK15535.1 I 0.653
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.653
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.649
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.649
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.649
Bo1g158730 Brassica oleracea Bo1g158730 I 0.648
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.648
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.648
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.648
Bra039135 Brassica rapa Bra039135 I 0.648
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.648
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.648
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.648
29983.m003123 Ricinus communis 29983.m003123 I 0.645
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.643
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.643
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.643
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.643
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.643
Bra009510 Brassica rapa Bra009510 I 0.643
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.643
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.643
Bo9g181720 Brassica oleracea Bo9g181720 I 0.643
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.643
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.640
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.640
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.640
Bo4g034490 Brassica oleracea Bo4g034490 I 0.640
Bra005259 Brassica rapa Bra005259 I 0.640
Bo2g005230 Brassica oleracea Bo2g005230 I 0.639
Bra028820 Brassica rapa Bra028820 I 0.639
Bo3g002560 Brassica oleracea Bo3g002560 I 0.639
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.636
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.635
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.634
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.633
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.633
MDP0000311522 Malus domestica MDP0000311522 I 0.629
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.625
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.623
TCM_031644 Theobroma cacao TCM_031644 I 0.623
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.623
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.623
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.623
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.623
Pm011328 Prunus mume Pm011328 I 0.623
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.623
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.623
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.623
MDP0000909160 Malus domestica MDP0000909160 I 0.623
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.623
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.623
mgf013301m Mimulus guttatus mgf013301m I 0.623
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.623
MDP0000146339 Malus domestica MDP0000146339 I 0.623
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.620
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.618
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.618
Bo2g042250 Brassica oleracea Bo2g042250 I 0.618
Bra022687 Brassica rapa Bra022687 I 0.618
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.618
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.618
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.618
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.618
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.617
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.615
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.613
Pavir.Ha00954 Panicum virgatum Pavir.Ha00954 N 0.613
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.603
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.602