Pavir.Ib01521 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ib01521 T229310_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX11
M06916_2.00 		Arabidopsis thaliana
ADTTAATTAVD
HBTAATTAAHT		 Dap-seq
OMalley et al.(2016)
WOX11_col_a 		0.757 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib01521.1.p Homeodomain 46 107

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR03G13850 Leersia perrieri LPERR03G13850 I 0.783
Sb01g036670 Sorghum bicolor Sb01g036670 I 0.783
Sb02g043300 Sorghum bicolor Sb02g043300 I 0.783
LPERR07G23470 Leersia perrieri LPERR07G23470 I 0.783
MLOC_65745 Hordeum vulgare MLOC_65745 I 0.783
Traes_4DL_5E79CC79C Triticum aestivum Traes_4DL_5E79CC79C I 0.783
Eucgr.A02149 Eucalyptus grandis Eucgr.A02149 I 0.783
WOX11 Oryza sativa OS07G0684900 I 0.783
Si030836m.g Setaria italica Si030836m.g I 0.783
Si039112m.g Setaria italica Si039112m.g I 0.783
GRMZM2G162481 Zea mays GRMZM2G162481 I 0.783
Traes_4AS_EC04D9E8A Triticum aestivum Traes_4AS_EC04D9E8A I 0.783
GLYMA19G29660 Glycine max GLYMA19G29660 I 0.783
Traes_2DS_B5227B5F6 Triticum aestivum Traes_2DS_B5227B5F6 I 0.783
OGLUM07G26700 Oryza glumaepatula OGLUM07G26700 I 0.783
F775_22811 Aegilops tauschii F775_22811 I 0.783
Traes_2BS_8A1FE01EE Triticum aestivum Traes_2BS_8A1FE01EE I 0.783
GLYMA03G01000 Glycine max GLYMA03G01000 I 0.783
OS03G0325600 Oryza sativa OS03G0325600 I 0.783
evm.TU.supercontig_73.3 Carica papaya evm.TU.supercontig_73.3 I 0.783
WOX6 Oryza indica BGIOSGA010824 I 0.783
ORUFI07G27650 Oryza rufipogon ORUFI07G27650 I 0.783
Pavir.Ia03448 Panicum virgatum Pavir.Ia03448 I 0.783
Pavir.J23422 Panicum virgatum Pavir.J23422 I 0.783
AMTR_s00119p00100440 Amborella trichopoda AMTR_s00119p00100440 I 0.783
OPUNC03G15320 Oryza punctata OPUNC03G15320 I 0.783
ONIVA07G26430 Oryza nivara ONIVA07G26430 I 0.783
OPUNC07G25100 Oryza punctata OPUNC07G25100 I 0.783
BGIOSGA026413 Oryza indica BGIOSGA026413 I 0.783
Pavir.Ba00249 Panicum virgatum Pavir.Ba00249 I 0.783
OGLUM03G15990 Oryza glumaepatula OGLUM03G15990 I 0.783
ORUFI03G16410 Oryza rufipogon ORUFI03G16410 I 0.783
MTR_6g027390 Medicago truncatula MTR_6g027390 I 0.783
OMERI07G23310 Oryza meridionalis OMERI07G23310 I 0.783
ORGLA07G0211000 Oryza glaberrima ORGLA07G0211000 I 0.783
ORGLA03G0151500 Oryza glaberrima ORGLA03G0151500 I 0.783
OBART07G26670 Oryza barthii OBART07G26670 I 0.783
OBART03G15820 Oryza barthii OBART03G15820 I 0.783
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.781
MTR_7g086940 Medicago truncatula MTR_7g086940 I 0.781
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.781
POPTR_0019s05730 Populus trichocarpa POPTR_0019s05730 I 0.781
GSMUA_Achr10G12820_001 Musa acuminata GSMUA_Achr10G12820_001 I 0.781
TCM_025805 Theobroma cacao TCM_025805 I 0.781
Ca_19701 Cicer arietinum Ca_19701 I 0.781
mgf016673m Mimulus guttatus mgf016673m I 0.781
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.781
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.781
Gorai.013G196400 Gossypium raimondii Gorai.013G196400 I 0.781
Aquca_014_00949 Aquilegia coerulea Aquca_014_00949 I 0.781
SapurV1A.0631s0110 Salix purpurea SapurV1A.0631s0110 I 0.781
LjSGA_037808.1 Lotus japonicus LjSGA_037808.1 I 0.781
BRADI1G17420 Brachypodium distachyon BRADI1G17420 I 0.781
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.781
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.781
Ca_08180 Cicer arietinum Ca_08180 I 0.781
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.781
30072.m000927 Ricinus communis 30072.m000927 I 0.781
LjT26C04.20.nd Lotus japonicus LjT26C04.20.nd I 0.781
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.781
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.779
GSMUA_Achr8G01590_001 Musa acuminata GSMUA_Achr8G01590_001 I 0.772
gene30337-v1.0-hybrid Fragaria vesca gene30337-v1.0-hybrid I 0.768
MDP0000136426 Malus domestica MDP0000136426 I 0.768
MDP0000524885 Malus domestica MDP0000524885 I 0.768
PRUPE_ppa026303mg Prunus persica PRUPE_ppa026303mg I 0.768
TRIUR3_34808 Triticum urartu TRIUR3_34808 I 0.762
GSMUA_Achr9G05010_001 Musa acuminata GSMUA_Achr9G05010_001 I 0.761
Thhalv10015651m.g Eutrema salsugineum Thhalv10015651m.g I 0.758
Bo1g153650 Brassica oleracea Bo1g153650 I 0.758
Bostr.19046s0084 Boechera stricta Bostr.19046s0084 I 0.758
Bra036446 Brassica rapa Bra036446 I 0.758
Carubv10016081m.g Capsella rubella Carubv10016081m.g I 0.758
Thhalv10022222m.g Eutrema salsugineum Thhalv10022222m.g I 0.758
Cagra.2098s0022 Capsella grandiflora Cagra.2098s0022 I 0.758
WOX11 Arabidopsis lyrata fgenesh2_kg.3__312__AT3G03660.1 I 0.757
WOX11 Arabidopsis thaliana AT3G03660 D 0.757
Cagra.6254s0027 Capsella grandiflora Cagra.6254s0027 I 0.756
Solyc06g072890.1 Solanum lycopersicum Solyc06g072890.1 I 0.756
Carubv10003719m.g Capsella rubella Carubv10003719m.g I 0.756
PGSC0003DMG400027030 Solanum tuberosum PGSC0003DMG400027030 I 0.756
Bra031980 Brassica rapa Bra031980 I 0.756
Bo5g148780 Brassica oleracea Bo5g148780 I 0.756
GRMZM2G314064 Zea mays GRMZM2G314064 I 0.751
WOX12 Arabidopsis lyrata Al_scaffold_0006_1694 I 0.750
Bra002108 Brassica rapa Bra002108 I 0.750
Bo9g159820 Brassica oleracea Bo9g159820 I 0.750
LPERR07G23520 Leersia perrieri LPERR07G23520 I 0.750
WOX12 Arabidopsis thaliana AT5G17810 I 0.750
Pm025458 Prunus mume Pm025458 I 0.747
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.741
GSMUA_Achr3G09460_001 Musa acuminata GSMUA_Achr3G09460_001 I 0.738
ONIVA08G08030 Oryza nivara ONIVA08G08030 I 0.738
Si015065m.g Setaria italica Si015065m.g I 0.738
MLOC_6669 Hordeum vulgare MLOC_6669 I 0.738
Sb07g007600 Sorghum bicolor Sb07g007600 I 0.738
GRMZM2G170958 Zea mays GRMZM2G170958 I 0.738
TRAES3BF079200050CFD_g Triticum aestivum TRAES3BF079200050CFD_g I 0.738
Pavir.Fb01029 Panicum virgatum Pavir.Fb01029 I 0.738
OGLUM08G08120 Oryza glumaepatula OGLUM08G08120 I 0.738
WOX10 Oryza indica BGIOSGA027391 I 0.738
BRADI3G18800 Brachypodium distachyon BRADI3G18800 I 0.738
TRIUR3_34876 Triticum urartu TRIUR3_34876 I 0.738
WOX10 Oryza sativa OS08G0242400 I 0.738
F775_11947 Aegilops tauschii F775_11947 I 0.738
ORUFI08G08400 Oryza rufipogon ORUFI08G08400 I 0.738
ORGLA08G0063600 Oryza glaberrima ORGLA08G0063600 I 0.738
GSMUA_Achr10G05090_001 Musa acuminata GSMUA_Achr10G05090_001 I 0.737
Pavir.J33010 Panicum virgatum Pavir.J33010 I 0.730
cassava4770.m1 Manihot esculenta cassava4770.m1 I 0.728
Bo2g013980 Brassica oleracea Bo2g013980 I 0.726
Bo2g062660 Brassica oleracea Bo2g062660 I 0.726
Bo11772s010 Brassica oleracea Bo11772s010 I 0.726
Bra023638 Brassica rapa Bra023638 I 0.726
mgf017527m Mimulus guttatus mgf017527m I 0.722
OB08G17020 Oryza brachyantha OB08G17020 I 0.716
OB10G14840 Oryza brachyantha OB10G14840 I 0.687
MTR_4g088080 Medicago truncatula MTR_4g088080 I 0.678
GRMZM2G409881 Zea mays GRMZM2G409881 I 0.675
Si025013m.g Setaria italica Si025013m.g I 0.675
Pavir.Ca00938 Panicum virgatum Pavir.Ca00938 I 0.675
Sb09g028562 Sorghum bicolor Sb09g028562 I 0.675
mgf001579m Mimulus guttatus mgf001579m I 0.658
Bra022960 Brassica rapa Bra022960 I 0.658
Aquca_036_00007 Aquilegia coerulea Aquca_036_00007 I 0.658
Gorai.009G165700 Gossypium raimondii Gorai.009G165700 I 0.658
BGIOSGA001059 Oryza indica BGIOSGA001059 I 0.658
Cucsa.046640 Cucumis sativus Cucsa.046640 I 0.658
SapurV1A.0012s0880 Salix purpurea SapurV1A.0012s0880 I 0.658
SapurV1A.0270s0270 Salix purpurea SapurV1A.0270s0270 I 0.658
Lus10005282.g Linum usitatissimum Lus10005282.g I 0.658
cassava40675.m1 Manihot esculenta cassava40675.m1 I 0.658
Gorai.011G031300 Gossypium raimondii Gorai.011G031300 I 0.658
cassava4506.m1 Manihot esculenta cassava4506.m1 I 0.658
Bostr.23794s0703 Boechera stricta Bostr.23794s0703 I 0.658
Pavir.Eb02702 Panicum virgatum Pavir.Eb02702 I 0.658
Carubv10025224m.g Capsella rubella Carubv10025224m.g I 0.658
ONIVA01G29060 Oryza nivara ONIVA01G29060 I 0.658
orange1.1g036145m.g Citrus sinensis orange1.1g036145m.g I 0.658
Ciclev10015562m.g Citrus clementina Ciclev10015562m.g I 0.658
OGLUM01G29670 Oryza glumaepatula OGLUM01G29670 I 0.658
MDP0000729328 Malus domestica MDP0000729328 I 0.658
Bo4g041330 Brassica oleracea Bo4g041330 I 0.658
29900.m001555 Ricinus communis 29900.m001555 I 0.658
Cagra.1195s0012 Capsella grandiflora Cagra.1195s0012 I 0.658
Bo3g027500 Brassica oleracea Bo3g027500 I 0.658
evm.TU.supercontig_7.12 Carica papaya evm.TU.supercontig_7.12 I 0.658
Bra005464 Brassica rapa Bra005464 I 0.658
gene29786-v1.0-hybrid Fragaria vesca gene29786-v1.0-hybrid I 0.658
ORGLA01G0211300 Oryza glaberrima ORGLA01G0211300 I 0.658
Pm010370 Prunus mume Pm010370 I 0.658
SELMODRAFT_115439 Selaginella moellendorffii SELMODRAFT_115439 I 0.658
CM1489.70.nc Lotus japonicus CM1489.70.nc I 0.658
MTR_2g015000 Medicago truncatula MTR_2g015000 I 0.658
SELMODRAFT_123325 Selaginella moellendorffii SELMODRAFT_123325 I 0.658
OS01G0667450 Oryza sativa OS01G0667450 I 0.658
OMERI01G23480 Oryza meridionalis OMERI01G23480 I 0.658
TCM_029776 Theobroma cacao TCM_029776 I 0.658
Solyc02g077390.1 Solanum lycopersicum Solyc02g077390.1 I 0.658
GSMUA_Achr8G27170_001 Musa acuminata GSMUA_Achr8G27170_001 I 0.658
GSMUA_Achr9G06660_001 Musa acuminata GSMUA_Achr9G06660_001 I 0.658
POPTR_0004s05090 Populus trichocarpa POPTR_0004s05090 I 0.658
WOX9 Arabidopsis lyrata Al_scaffold_0004_1872 I 0.658
PGSC0003DMG400010725 Solanum tuberosum PGSC0003DMG400010725 I 0.658
POPTR_0011s05980 Populus trichocarpa POPTR_0011s05980 I 0.658
OBART01G25820 Oryza barthii OBART01G25820 I 0.658
LPERR01G22080 Leersia perrieri LPERR01G22080 I 0.658
PRUPE_ppa019841mg Prunus persica PRUPE_ppa019841mg I 0.658
MTR_7g025010 Medicago truncatula MTR_7g025010 I 0.658
AMTR_s00021p00189010 Amborella trichopoda AMTR_s00021p00189010 I 0.658
Ca_00357 Cicer arietinum Ca_00357 I 0.658
VIT_10s0003g00560 Vitis vinifera VIT_10s0003g00560 I 0.658
Cla009819 Citrullus lanatus Cla009819 I 0.658
Ca_06365 Cicer arietinum Ca_06365 I 0.658
GLYMA07G32430 Glycine max GLYMA07G32430 I 0.658
GLYMA10G08030 Glycine max GLYMA10G08030 I 0.658
Thhalv10016784m.g Eutrema salsugineum Thhalv10016784m.g I 0.658
MDP0000232004 Malus domestica MDP0000232004 I 0.658
GLYMA13G24150 Glycine max GLYMA13G24150 I 0.658
GRMZM2G031882 Zea mays GRMZM2G031882 I 0.658
GRMZM2G133972 Zea mays GRMZM2G133972 I 0.658
WOX9 Arabidopsis thaliana AT2G33880 I 0.658
OB01G35000 Oryza brachyantha OB01G35000 I 0.658
GLYMA13G21860 Glycine max GLYMA13G21860 I 0.658
Eucgr.D00577 Eucalyptus grandis Eucgr.D00577 I 0.657
PDK_20s13009443g001 Phoenix dactylifera PDK_20s13009443g001 I 0.656
MLOC_7925 Hordeum vulgare MLOC_7925 I 0.653
Si004249m.g Setaria italica Si004249m.g I 0.653
TRAES3BF022100010CFD_g Triticum aestivum TRAES3BF022100010CFD_g I 0.653
gene28935-v1.0-hybrid Fragaria vesca gene28935-v1.0-hybrid I 0.649
BGIOSGA020366 Oryza indica BGIOSGA020366 I 0.642
OBART05G25900 Oryza barthii OBART05G25900 I 0.642
F775_23099 Aegilops tauschii F775_23099 I 0.642
OGLUM05G27500 Oryza glumaepatula OGLUM05G27500 I 0.642
ORUFI05G27780 Oryza rufipogon ORUFI05G27780 I 0.642
OS05G0564500 Oryza sativa OS05G0564500 I 0.642
ORGLA05G0223800 Oryza glaberrima ORGLA05G0223800 I 0.642
OPUNC05G23480 Oryza punctata OPUNC05G23480 I 0.642
ONIVA05G27800 Oryza nivara ONIVA05G27800 I 0.642
PDK_20s1465351g003 Phoenix dactylifera PDK_20s1465351g003 I 0.629
Cagra.2097s0014 Capsella grandiflora Cagra.2097s0014 I 0.622
WOX8 Arabidopsis lyrata scaffold_800245.1 I 0.622
Carubv10027735m.g Capsella rubella Carubv10027735m.g I 0.622
Bo2g127670 Brassica oleracea Bo2g127670 I 0.622
Bostr.8819s0128 Boechera stricta Bostr.8819s0128 I 0.622
Bra022008 Brassica rapa Bra022008 I 0.622
WOX8 Arabidopsis thaliana AT5G45980 I 0.617
mgf023275m Mimulus guttatus mgf023275m I 0.602
POPTR_0001s24470 Populus trichocarpa POPTR_0001s24470 I 0.601
AMTR_s00012p00149750 Amborella trichopoda AMTR_s00012p00149750 I 0.601
29876.m000245 Ricinus communis 29876.m000245 I 0.601
Cla008386 Citrullus lanatus Cla008386 I 0.601
cassava38630.m1 Manihot esculenta cassava38630.m1 I 0.601
Thhalv10001099m.g Eutrema salsugineum Thhalv10001099m.g I 0.601
Bo7g061410 Brassica oleracea Bo7g061410 I 0.600
Bo09314s010 Brassica oleracea Bo09314s010 I 0.600