Pavir.J13578 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J13578 T229339_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HOS66
M02156_2.00
Oryza sativa
NNNNDHNN

NNDHNNNN
PBM
Weirauch et al.(2014)
pTH8332
0.767 0.912
KNAT7
M01064_2.00
Arabidopsis thaliana
TGACRKST

ASMYGTCA
PBM
Sullivan et al.(2014)
pTH9798
0.761 0.882
KNAT4
M01238_2.00
Arabidopsis thaliana
NNGACNNNN

NNNNGTCNN
PBM
Lambert et al.(2019)
pTH9968
0.758 0.794
KNAT3
M02051_2.00
Arabidopsis thaliana
NNNGACVBNN

NNVBGTCNNN
PBM
Weirauch et al.(2014)
pTH7600
0.758 0.794
MEIS3
M03093_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.684 0.441
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.684 0.441
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA

TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.684 0.441
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR

YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.684 0.441
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN

NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.642 0.500
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J13578.1.p Homeodomain 7 40

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

Invalid Input OrderBy

573 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action