Pavir.J34036 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J34036 T229366_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WUS
M06905_2.00
Arabidopsis thaliana
TRAWTGAWTGA

TCAWTCAWTYA
Dap-seq
OMalley et al.(2016)
WUS1_col_a
0.627 0.614
WUS
M06906_2.00
Arabidopsis thaliana
TGAWTGAWTGW

WCAWTCAWTCA
Dap-seq
OMalley et al.(2016)
WUS1_colamp_a
0.627 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J34036.1.p Homeodomain 11 72

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

439 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
M404DRAFT_63984 Pisolithus tinctorius M404DRAFT_63984 I 0.000
Phatr3_J45662 Phaeodactylum tricornutum Phatr3_J45662 I 0.000
TRIATDRAFT_321166 Trichoderma atroviride TRIATDRAFT_321166 I 0.000
TRIVIDRAFT_228694 Trichoderma virens TRIVIDRAFT_228694 I 0.000
Phatr3_J34626 Phaeodactylum tricornutum Phatr3_J34626 N 0.000
Phatr3_J39880 Phaeodactylum tricornutum Phatr3_J39880 N 0.000
gw1.30.62.1 Fragilariopsis cylindrus gw1.30.62.1 N 0.000