Pavir.J39623 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J39623 T229376_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNOX3_HORVU
M10790_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$KNOX3_01 		0.626 0.614
KNAT6
M02037_2.00 		Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN		 PBM
Weirauch et al.(2014)
pTH7296 		0.606 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J39623.1.p Homeodomain 21 81

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

Invalid Input OrderBy

283 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action