Thhalv10011238m.g (Eutrema salsugineum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Thhalv10011238m.g T229558_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-15
M00864_2.00
Arabidopsis thaliana
AATAATTACT

AGTAATTATT
PBM
Franco-Zorrilla et al.(2014)
ICU4
0.867 1.000
ATHB-15
M06899_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH

DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
ATHB15_col_a
0.867 1.000
ATHB-9
M06898_2.00
Arabidopsis thaliana
DWWDRTAATGATKAH

DTMATCATTAYHWWH
Dap-seq
OMalley et al.(2016)
PHV_col_a
0.861 0.911
ATHB-9
M02682_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS

SVRHGYAATCATTACDDND
SELEX
Mathelier et al.(2014)
MA0573.1
0.861 0.911
ATHB-9
M10623_2.00
Arabidopsis thaliana
HNHHGTAATGATTRCDYBS

SVRHGYAATCATTACDDND
Transfac
Matys et al.(2006)
P$ATHB9_01
0.861 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10011238m Homeodomain 16 75

Links

Other Homeodomain family TFs
Other Eutrema salsugineum TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PZF1 Saccharomyces cerevisiae YPR186C D 0.000
SKUD_152903 Saccharomyces kudriavzevii SKUD_152903 I 0.000
22737_YPR186C Saccharomyces paradoxus 22737_YPR186C I 0.000
22948_YPR186C Saccharomyces mikatae 22948_YPR186C I 0.000