Thhalv10024489m.g (Eutrema salsugineum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Thhalv10024489m.g T229603_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MTR_2g038000
M02141_2.00
Medicago truncatula
NDNYWNNNNN

NNNNNWRNHN
PBM
Weirauch et al.(2014)
pTH6339
0.683 0.714
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10024487m Homeodomain 453 508
Thhalv10024489m Homeodomain 453 508

Links

Other Homeodomain family TFs
Other Eutrema salsugineum TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.867
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.852
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.852
Bra011153 Brassica rapa Bra011153 I 0.834
Bo1g014710 Brassica oleracea Bo1g014710 I 0.826
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.819
PRH Arabidopsis thaliana AT4G29940 I 0.813
Bra010310 Brassica rapa Bra010310 I 0.771
Bo3g175850 Brassica oleracea Bo3g175850 I 0.771
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.721
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.694
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.683
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.680
Pm008905 Prunus mume Pm008905 I 0.675
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.675
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.674
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.671
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.669
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.669
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.667
Ca_08838 Cicer arietinum Ca_08838 I 0.664
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.662
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.654
29671.m000294 Ricinus communis 29671.m000294 I 0.648
mgf003961m Mimulus guttatus mgf003961m I 0.644
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.631
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.627