AAA85027 (Xenopus laevis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 AAA85027 T229631_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pdx1
M00446_2.00
Mus musculus
NWRAYNNN

NNNRTYWN
PBM
Berger et al.(2008)
Ipf1_3815
0.069 1.000
PDX1
M03155_2.00
Homo sapiens
NTAATTRNNNYTAATTRN

NYAATTARNNNYAATTAN
SELEX
Jolma et al.(2013)
PDX1_1
0.069 1.000
PDX1
M03156_2.00
Homo sapiens
BTAATKRN

NYMATTAV
SELEX
Jolma et al.(2013)
PDX1_2
0.069 1.000
PDX1
M05161_2.00
Homo sapiens
YTAATKRB

VYMATTAR
SELEX
Yin et al.(2017)
PDX1_eDBD_HT-SELEX
0.069 1.000
PDX1
M09147_2.00
Homo sapiens
TGATWGATK

MATCWATCA
Misc
Kulakovskiy et al.(2013)
PDX1_HUMAN.H11MO.0.A
0.069 1.000
Pdx1
M09192_2.00
Mus musculus
VYTAATGRB

VYCATTARB
Misc
Kulakovskiy et al.(2013)
PDX1_MOUSE.H11MO.0.B
0.069 1.000
Pdx1
M09571_2.00
Mus musculus
TGATTRATKR

YMATYAATCA
Misc
Heinz et al.(2010)
Islet-Pdx1_SRA008281
0.069 1.000
PDX1
M10699_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_01
0.069 1.000
PDX1
M10700_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_02
0.069 1.000
PDX1
M10701_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_03
0.069 1.000
PDX1
M10702_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_04
0.069 1.000
PDX1
M10703_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_05
0.069 1.000
PDX1
M10704_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q4_01
0.069 1.000
PDX1
M10705_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q4
0.069 1.000
PDX1
M10706_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q5_01
0.069 1.000
PDX1
M10707_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q5
0.069 1.000
PDX1
M10708_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q6
0.069 1.000
PDX1
M05162_2.00
Homo sapiens
HTAAYGAB

VTCRTTAD
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_1
0.069 1.000
PDX1
M05163_2.00
Homo sapiens
YTAATKRB

VYMATTAR
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_2
0.069 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAA85027 Homeodomain 1 31

Links

Other Homeodomain family TFs
Other Xenopus laevis TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
hoxb2.S Xenopus laevis XB-GENE-478530 I 0.847
hoxa10.L Xenopus laevis XB-GENE-6486002 I 0.845
hoxa4.S Xenopus laevis XB-GENE-865635 N 0.842
AAA85030 Xenopus laevis AAA85030 N 0.825
ENSPMAG00000010256 Petromyzon marinus ENSPMAG00000010256 N 0.777
Brh_R000003 Buceros rhinoceros Brh_R000003 I 0.769
ENSPMAG00000009999 Petromyzon marinus ENSPMAG00000009999 N 0.763
PHOX2A Homo sapiens ENSG00000165462 D 0.761
SROB_0000391301 Schistosoma rodhaini SROB_0000391301 N 0.740
Minc08600 Meloidogyne incognita Minc08600 N 0.738
EFV59239 Trichinella spiralis EFV59239 N 0.733
NBR_0001551701 Nippostrongylus brasiliensis NBR_0001551701 N 0.733
MEIS3 Callithrix jacchus ENSCJAG00000011475 I 0.725
Cmyd_10012611 Chelonia mydas Cmyd_10012611 N 0.725
SMTD_0001546801 Schistosoma mattheei SMTD_0001546801 N 0.725
D917_09995 Trichinella nativa D917_09995 I 0.725
SROB_0000951501 Schistosoma rodhaini SROB_0000951501 N 0.725
SCUD_0000812001 Schistosoma curassoni SCUD_0000812001 N 0.722
LotgiG178004 Lottia gigantea LotgiG178004 N 0.722
ECPE_0000380901 Echinostoma caproni ECPE_0000380901 N 0.722
ANCDUO_21488 Ancylostoma duodenale ANCDUO_21488 N 0.714
ANCDUO_21460 Ancylostoma duodenale ANCDUO_21460 N 0.714
ENSMMUG00000032301 Macaca mulatta ENSMMUG00000032301 I 0.709
ENSMMUG00000030441 Macaca mulatta ENSMMUG00000030441 I 0.709
ENSETEG00000007628 Echinops telfairi ENSETEG00000007628 I 0.709
L898_g2802 Steinernema monticolum L898_g2802 N 0.706
L893_g22533 Steinernema glaseri L893_g22533 N 0.705
CTTNBP2NL Monodelphis domestica ENSMODG00000001211 N 0.703
ENSSHAG00000016995 Sarcophilus harrisii ENSSHAG00000016995 N 0.703
SVUK_0001098001 Strongylus vulgaris SVUK_0001098001 N 0.702
ENSPPYG00000005435 Pongo abelii ENSPPYG00000005435 N 0.691
PEQ_0000908401 Parascaris equorum PEQ_0000908401 N 0.686
ENSAPLG00000006966 Anas platyrhynchos ENSAPLG00000006966 N 0.684
nRc.2.0.1.g13634 Romanomermis culicivorax nRc.2.0.1.g13634 N 0.684
SVUK_0000323501 Strongylus vulgaris SVUK_0000323501 N 0.682
nDi.2.2.2.g12219 Dirofilaria immitis nDi.2.2.2.g12219 N 0.678
SINV18611 Solenopsis invicta SINV18611 N 0.678
HPBE_0002557401 Heligmosomoides bakeri HPBE_0002557401 N 0.676
A_07772 Schistosoma haematobium A_07772 N 0.674
ISCW021207 Ixodes scapularis ISCW021207 N 0.672
ACAC_0000073601 Angiostrongylus cantonensis ACAC_0000073601 N 0.671
L889_g12823 Steinernema feltiae L889_g12823 N 0.671
ENSTRUG00000017521 Takifugu rubripes ENSTRUG00000017521 I 0.667
DILT_0001433701 Diphyllobothrium latum DILT_0001433701 N 0.667
LLOJ003025 Lutzomyia longipalpis LLOJ003025 N 0.662
MVLG_07150 Microbotryum violaceum MVLG_07150 N 0.659
MCINX000790 Melitaea cinxia MCINX000790 N 0.658
ASIS021566 Anopheles sinensis ASIS021566 N 0.658
EMIHUDRAFT_241459 Emiliania huxleyi EMIHUDRAFT_241459 N 0.654
SCLCIDRAFT_1207514 Scleroderma citrinum SCLCIDRAFT_1207514 N 0.654
GLRG_06242 Colletotrichum graminicola GLRG_06242 N 0.650
CMU_000020 Cryptosporidium muris CMU_000020 N 0.650
PEQ_0001057801 Parascaris equorum PEQ_0001057801 N 0.647
EVEC_0001028401 Enterobius vermicularis EVEC_0001028401 N 0.645
SNAPOd2T00000484001 Oikopleura dioica SNAPOd2T00000484001 N 0.644
MCINX013555 Melitaea cinxia MCINX013555 N 0.640
BGLB008237 Biomphalaria glabrata BGLB008237 N 0.639
fgeneshTM_pg.13_#_82 Tremella mesenterica fgeneshTM_pg.13_#_82 N 0.638
CAA77673 Xenopus laevis CAA77673 I 0.635
lhx5.S Xenopus laevis XB-GENE-865965 I 0.635
ACEP17701 Atta cephalotes ACEP17701 N 0.632
GPLIN_001034800 Globodera pallida GPLIN_001034800 N 0.631
OBART08G15250 Oryza barthii OBART08G15250 N 0.630
ORGLA08G0133100 Oryza glaberrima ORGLA08G0133100 N 0.630
CpipJ_CPIJ015450 Culex pipiens CpipJ_CPIJ015450 N 0.629
CPIJ015450 Culex quinquefasciatus CPIJ015450 N 0.629
ACUA018278 Anopheles culicifacies ACUA018278 N 0.629
L892_g23489 Steinernema scapterisci L892_g23489 N 0.625
lhx3.L Xenopus laevis XB-GENE-865930 I 0.625
PEQ_0000480201 Parascaris equorum PEQ_0000480201 N 0.623
orange1.1g005863m.g Citrus sinensis orange1.1g005863m.g I 0.623
MTR_3g112300 Medicago truncatula MTR_3g112300 I 0.623
L798_12976 Zootermopsis nevadensis L798_12976 N 0.623
Gorai.003G023300 Gossypium raimondii Gorai.003G023300 N 0.621
LCUP014212 Lucilia cuprina LCUP014212 N 0.618
CJA33058 Caenorhabditis japonica CJA33058 N 0.612
CJA41362 Caenorhabditis japonica CJA41362 N 0.612
ENSXMAG00000019975 Xiphophorus maculatus ENSXMAG00000019975 N 0.612
ENSCSAVG00000002570 Ciona savignyi ENSCSAVG00000002570 N 0.606
MTR_6g007613 Medicago truncatula MTR_6g007613 N 0.600
TVAG_170510 Trichomonas vaginalis TVAG_170510 N 0.600
ENSSSCG00000009315 Sus scrofa ENSSSCG00000009315 I 0.302