CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AAA85027
(
Xenopus laevis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
AAA85027
T229631_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pdx1
M00446_2.00
Mus musculus
NWRAYNNN
NNNRTYWN
PBM
Berger et al.(2008)
Ipf1_3815
0.069
1.000
PDX1
M03155_2.00
Homo sapiens
NTAATTRNNNYTAATTRN
NYAATTARNNNYAATTAN
SELEX
Jolma et al.(2013)
PDX1_1
0.069
1.000
PDX1
M03156_2.00
Homo sapiens
BTAATKRN
NYMATTAV
SELEX
Jolma et al.(2013)
PDX1_2
0.069
1.000
PDX1
M05161_2.00
Homo sapiens
YTAATKRB
VYMATTAR
SELEX
Yin et al.(2017)
PDX1_eDBD_HT-SELEX
0.069
1.000
PDX1
M09147_2.00
Homo sapiens
TGATWGATK
MATCWATCA
Misc
Kulakovskiy et al.(2013)
PDX1_HUMAN.H11MO.0.A
0.069
1.000
Pdx1
M09192_2.00
Mus musculus
VYTAATGRB
VYCATTARB
Misc
Kulakovskiy et al.(2013)
PDX1_MOUSE.H11MO.0.B
0.069
1.000
Pdx1
M09571_2.00
Mus musculus
TGATTRATKR
YMATYAATCA
Misc
Heinz et al.(2010)
Islet-Pdx1_SRA008281
0.069
1.000
PDX1
M10699_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_01
0.069
1.000
PDX1
M10700_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_02
0.069
1.000
PDX1
M10701_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_03
0.069
1.000
PDX1
M10702_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_04
0.069
1.000
PDX1
M10703_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_05
0.069
1.000
PDX1
M10704_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q4_01
0.069
1.000
PDX1
M10705_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q4
0.069
1.000
PDX1
M10706_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q5_01
0.069
1.000
PDX1
M10707_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q5
0.069
1.000
PDX1
M10708_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IPF1_Q6
0.069
1.000
PDX1
M05162_2.00
Homo sapiens
HTAAYGAB
VTCRTTAD
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_1
0.069
1.000
PDX1
M05163_2.00
Homo sapiens
YTAATKRB
VYMATTAR
SELEX
Yin et al.(2017)
PDX1_eDBD_Methyl-HT-SELEX_2
0.069
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAA85027
Homeodomain
1
31
EFLFNKYISRPRRVELAVMLNLTERHIKIWF
Links
Other
Homeodomain
family TFs
Other
Xenopus laevis
TFs
82 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy