AAY89592 (Xenopus tropicalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 AAY89592 T229665_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Irx2
M00386_2.00
Mus musculus
NNDACAHNN

NNDTGTHNN
PBM
Berger et al.(2008)
Irx2_0900
0.867 1.000
Irx5
M00455_2.00
Mus musculus
NNNDACAHN

NDTGTHNNN
PBM
Berger et al.(2008)
Irx5_2385
0.867 1.000
IRX2
M03212_2.00
Homo sapiens
NDACAYRACAHN

NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX2_1
0.867 1.000
IRX5
M03222_2.00
Homo sapiens
NDACAYRACAHN

NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX5_1
0.867 1.000
IRX5
M05315_2.00
Homo sapiens
NBDTGTHNDACAYVN

NBRTGTHNDACAHVN
SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX
0.867 1.000
IRX5
M05316_2.00
Homo sapiens
WYRYGHHNHAYRYRY

RYRYRTDNDDCRYRW
SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX
0.867 1.000
ara
M06518_2.00
Drosophila melanogaster
WWACA

TGTWW
B1H
Mathelier et al.(2014)
MA0210.1
0.815 0.930
ara
M06313_2.00
Drosophila melanogaster
TGTWWWNN

NNWWWACA
B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904
0.815 0.930
ara
M06314_2.00
Drosophila melanogaster
DWWACA

TGTWWH
B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904
0.815 0.930
caup
M06519_2.00
Drosophila melanogaster
WAACA

TGTTW
B1H
Mathelier et al.(2014)
MA0217.1
0.806 0.877
caup
M06315_2.00
Drosophila melanogaster
HWDWAACA

TGTTWHWD
B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919
0.806 0.877
caup
M06316_2.00
Drosophila melanogaster
NDDACA

TGTHHN
B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919
0.806 0.877
Irx4
M00416_2.00
Mus musculus
NNNDAMAH

DTKTHNNN
PBM
Berger et al.(2008)
Irx4_2242
0.780 0.877
Irx6
M00456_2.00
Mus musculus
NNDAHWN

NWDTHNN
PBM
Berger et al.(2008)
Irx6_2623
0.780 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAY89592 Homeodomain 110 169

Links

Other Homeodomain family TFs
Other Xenopus tropicalis TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.000
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.000
SPL8 Arabidopsis thaliana AT1G02065 D 0.000
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.000
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.000
Bo8g118210 Brassica oleracea Bo8g118210 I 0.000
Bo5g001290 Brassica oleracea Bo5g001290 I 0.000
Bra032662 Brassica rapa Bra032662 I 0.000
Bra033221 Brassica rapa Bra033221 I 0.000
PK25779.1 Cannabis sativa PK25779.1 I 0.000
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.000
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.000
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.000
Ca_18942 Cicer arietinum Ca_18942 I 0.000
Cla006776 Citrullus lanatus Cla006776 I 0.000
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.000
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.000
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.000
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.000
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.000
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.000
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.000
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.000
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.000
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.000
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.000
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.000
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.000
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.000
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.000
MDP0000803116 Malus domestica MDP0000803116 I 0.000
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.000
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.000
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.000
mgf016085m Mimulus guttatus mgf016085m I 0.000
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.000
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.000
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.000
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.000
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.000
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.000
OBART04G27990 Oryza barthii OBART04G27990 I 0.000
OB04G34990 Oryza brachyantha OB04G34990 I 0.000
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.000
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.000
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.000
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.000
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.000
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.000
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.000
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.000
SPL8 Oryza sativa OS04G0656500 I 0.000
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.000
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.000
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.000
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.000
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.000
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.000
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.000
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.000
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.000
Pm017777 Prunus mume Pm017777 I 0.000
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.000
30174.m008803 Ricinus communis 30174.m008803 I 0.000
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.000
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.000
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.000
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.000
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.000
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.000
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.000
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.000
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.000
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.000
Si022315m.g Setaria italica Si022315m.g I 0.000
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.000
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.000
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.000
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.000
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.000
TCM_005622 Theobroma cacao TCM_005622 I 0.000
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.000
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.000
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.000