CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CLEC006125
(
Cimex lectularius
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
CLEC006125
T229719_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN
NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.785
0.578
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN
NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.785
0.578
VSX1
M04941_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.785
0.578
VSX1
M04944_2.00
Homo sapiens
NTAATTRS
SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.785
0.578
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN
NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.785
0.578
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN
NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.785
0.578
VSX1
M04943_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.785
0.578
VSX1
M04945_2.00
Homo sapiens
NTAATTRG
CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.785
0.578
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN
NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.785
0.578
VAX1
M03168_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.735
0.378
VAX1
M05182_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.735
0.378
VAX1
M05183_2.00
Homo sapiens
BTMATKRN
NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.735
0.378
Gsc
M02120_2.00
Drosophila melanogaster
NTAATCYN
NRGATTAN
PBM
Weirauch et al.(2014)
pTH5511
0.360
1.000
Gsc
M03817_2.00
Drosophila melanogaster
TAATCCB
VGGATTA
SELEX
Nitta et al.(2015)
Gsc_1
0.360
1.000
Gsc
M03818_2.00
Drosophila melanogaster
TAATCGGATTA
TAATCCGATTA
SELEX
Nitta et al.(2015)
Gsc_2
0.360
1.000
Gsc
M03819_2.00
Drosophila melanogaster
TAATCYNHTAATCBN
NVGATTADNRGATTA
SELEX
Nitta et al.(2015)
Gsc_3
0.360
1.000
Gsc
M03820_2.00
Drosophila melanogaster
TAATCGGATTA
TAATCCGATTA
SELEX
Nitta et al.(2015)
Gsc_4
0.360
1.000
Gsc
M03821_2.00
Drosophila melanogaster
TAATCYNWTWATCYB
VRGATWAWNRGATTA
SELEX
Nitta et al.(2015)
Gsc_5
0.360
1.000
Gsc
M05873_2.00
Drosophila melanogaster
TAATCSNHTWA
TWADNSGATTA
SMiLE-seq
Isakova et al.(2017)
Gsc
0.360
1.000
Gsc
M06509_2.00
Drosophila melanogaster
TAATCY
RGATTA
B1H
Mathelier et al.(2014)
MA0190.1
0.360
1.000
Gsc
M06297_2.00
Drosophila melanogaster
VNTAATCY
RGATTANB
B1H
Zhu et al.(2011)
Gsc_Cell_FBgn0010323
0.360
1.000
Gsc
M06298_2.00
Drosophila melanogaster
NTAATCY
RGATTAN
B1H
Zhu et al.(2011)
Gsc_SOLEXA_FBgn0010323
0.360
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CLEC006125-PA
Homeodomain
19
63
RRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVE
Links
Other
Homeodomain
family TFs
Other
Cimex lectularius
TFs
1233 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy