|
HHAL002779-PA
(Halyomorpha halys)
Homeodomain
|
TF Information |
Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
PF00046 (Homeobox) |
IPR001356 |
HHAL002779-PA |
T229834_2.00 |
Misc (2018-Jan-19) |
NCBI Gene Info:This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016] |
Directly determined binding motifs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
No direct experiments |
|
|
|
|
|
Motifs from related TFs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
NEMVEDRAFT_v1g136480
M02147_2.00 |
Nematostella vectensis |
NNNNNNNNNN |
NNNNNNNNNN |
PBM
Weirauch et al.(2014)
pTH6103
|
0.702
|
0.544
|
Rax
M00426_2.00 |
Mus musculus |
NNTAATTRN |
NYAATTANN |
PBM
Berger et al.(2008)
Rax_3443
|
0.619
|
0.702
|
RAX
M03149_2.00 |
Homo sapiens |
NHTAATTRNN |
NNYAATTADN |
SELEX
Jolma et al.(2013)
RAX_1
|
0.619
|
0.702
|
Rx
M03840_2.00 |
Drosophila melanogaster |
BTAATTRV |
BYAATTAV |
SELEX
Nitta et al.(2015)
Rx_1
|
0.619
|
0.702
|
Rx
M03841_2.00 |
Drosophila melanogaster |
NTAATBNSATTAN |
NTAATSNVATTAN |
SELEX
Nitta et al.(2015)
Rx_2
|
0.619
|
0.702
|
RAX
M05142_2.00 |
Homo sapiens |
YYAATTRN |
NYAATTRR |
SELEX
Yin et al.(2017)
RAX_eDBD_HT-SELEX
|
0.619
|
0.702
|
Rx
M06520_2.00 |
Drosophila melanogaster |
YTAATTR |
YAATTAR |
B1H
Mathelier et al.(2014)
MA0202.1
|
0.619
|
0.702
|
Rx
M06317_2.00 |
Drosophila melanogaster |
VYTAATTR |
YAATTARB |
B1H
Zhu et al.(2011)
Rx_Cell_FBgn0020617
|
0.619
|
0.702
|
Rx
M06318_2.00 |
Drosophila melanogaster |
HTAATTR |
YAATTAD |
B1H
Zhu et al.(2011)
Rx_SOLEXA_FBgn0020617
|
0.619
|
0.702
|
Rax
M10773_2.00 |
Rattus norvegicus |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$RAX_04
|
0.619
|
0.702
|
RAX
M05143_2.00 |
Homo sapiens |
NTAAYRNN |
NNYRTTAN |
SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_1
|
0.619
|
0.702
|
RAX
M05144_2.00 |
Homo sapiens |
YYAATTRN |
NYAATTRR |
SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_2
|
0.619
|
0.702
|
RAX2
M03214_2.00 |
Homo sapiens |
NTAATTRN |
NYAATTAN |
SELEX
Jolma et al.(2013)
RAXL1_1
|
0.615
|
0.684
|
For this family, TFs with SR scores > 0.599 will likely have a similar motif |