CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LCUP000252
(
Lucilia cuprina
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
LCUP000252
T229876_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bcd
M03779_2.00
Drosophila melanogaster
NNNTAATCCNN
NNGGATTANNN
SELEX
Nitta et al.(2015)
bcd_1
0.857
0.930
bcd
M05872_2.00
Drosophila melanogaster
HTAATCY
RGATTAD
SMiLE-seq
Isakova et al.(2017)
Bcd
0.857
0.930
bcd
M06480_2.00
Drosophila melanogaster
TAATCC
GGATTA
B1H
Mathelier et al.(2014)
MA0212.1
0.857
0.930
bcd
M06219_2.00
Drosophila melanogaster
BNTAATCC
GGATTANV
B1H
Zhu et al.(2011)
Bcd_Cell_FBgn0000166
0.857
0.930
bcd
M06220_2.00
Drosophila melanogaster
HTAAKCYB
VRGMTTAD
B1H
Zhu et al.(2011)
bcd_FlyReg_FBgn0000166
0.857
0.930
bcd
M06221_2.00
Drosophila melanogaster
YWAAKCY
RGMTTWR
B1H
Zhu et al.(2011)
bcd_NAR_FBgn0000166
0.857
0.930
bcd
M06222_2.00
Drosophila melanogaster
BTAATCY
RGATTAV
B1H
Zhu et al.(2011)
Bcd_SOLEXA_FBgn0000166
0.857
0.930
bcd
M09673_2.00
Drosophila melanogaster
YTAAKCY
RGMTTAR
Misc
Kulakovskiy et al.(2009)
bcd
0.857
0.930
bcd
M10782_2.00
Drosophila melanogaster
HTAATCYS
SRGATTAD
Transfac
Matys et al.(2006)
I$BCD_01
0.857
0.930
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LCUP000252-PA
Homeodomain
77
133
RRTRTTFTSAQIAELEQHFLQGRYLTSSRLAELSAKLALGTAQVKIWFKNRRRRHKI
Links
Other
Homeodomain
family TFs
Other
Lucilia cuprina
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDOA003664
Musca domestica
MDOA003664
I
0.865
GH19480
Drosophila grimshawi
FBgn0126945
I
0.857
GI24718
Drosophila mojavensis
FBgn0147440
I
0.857
GE25828
Drosophila yakuba
FBgn0242878
I
0.857
GG10213
Drosophila erecta
FBgn0102523
I
0.857
GK10828
Drosophila willistoni
FBgn0212839
I
0.857
GF17793
Drosophila ananassae
FBgn0094811
I
0.857
bcd
Drosophila sechellia
FBgn0012791
I
0.857
bcd
Drosophila melanogaster
FBgn0000166
D
0.857
bcd
Drosophila simulans
FBgn0012864
I
0.857
bcd
Drosophila virilis
FBgn0013104
I
0.857
bcd
Drosophila pseudoobscura
FBgn0086857
I
0.857
LEUTX
Dasypus novemcinctus
ENSDNOG00000024747
I
0.599