PK15857.1 (Cannabis sativa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 PK15857.1 T230102_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
KNAT3
M02051_2.00
Arabidopsis thaliana
NNNGACVBNN

NNVBGTCNNN
PBM
Weirauch et al.(2014)
pTH7600
0.867 0.980
KNAT4
M01238_2.00
Arabidopsis thaliana
NNGACNNNN

NNNNGTCNN
PBM
Lambert et al.(2019)
pTH9968
0.867 0.959
KNAT7
M01064_2.00
Arabidopsis thaliana
TGACRKST

ASMYGTCA
PBM
Sullivan et al.(2014)
pTH9798
0.861 0.857
HOS66
M02156_2.00
Oryza sativa
NNNNDHNN

NNDHNNNN
PBM
Weirauch et al.(2014)
pTH8332
0.830 0.878
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN

NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.721 0.490
MEIS3
M03093_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.663 0.449
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.663 0.449
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA

TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.663 0.449
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR

YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.663 0.449
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK15857.1 Homeodomain 251 302

Links

Other Homeodomain family TFs
Other Cannabis sativa TFs

512 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cmyd_10002847 Chelonia mydas Cmyd_10002847 N 0.000
ENSAMEG00000001827 Ailuropoda melanoleuca ENSAMEG00000001827 N 0.000
TCF23 Bos taurus ENSBTAG00000014813 N 0.000
TCF23 Canis familiaris ENSCAFG00000030192 N 0.000
ENSCPOG00000003785 Cavia porcellus ENSCPOG00000003785 N 0.000
Tcf23 Dipodomys ordii ENSDORG00000014403 N 0.000
TCF23 Equus caballus ENSECAG00000021374 N 0.000
TCF23 Loxodonta africana ENSLAFG00000014587 N 0.000
ENSMEUG00000010665 Macropus eugenii ENSMEUG00000010665 N 0.000
TCF23 Monodelphis domestica ENSMODG00000015714 N 0.000
Tcf23 Mus musculus ENSMUSG00000006642 N 0.000
ENSOARG00000019168 Ovis aries ENSOARG00000019168 N 0.000
ENSOCUG00000008655 Oryctolagus cuniculus ENSOCUG00000008655 N 0.000
ENSOPRG00000010556 Ochotona princeps ENSOPRG00000010556 N 0.000
ENSP00000296096-D1 Bos grunniens ENSP00000296096-D1 N 0.000
ENSPVAG00000015152 Pteropus vampyrus ENSPVAG00000015152 N 0.000
Tcf23 Rattus norvegicus ENSRNOG00000025736 N 0.000
ENSSHAG00000012462 Sarcophilus harrisii ENSSHAG00000012462 N 0.000
TCF23 Sus scrofa ENSSSCG00000027409 N 0.000
ENSSTOG00000015523 Ictidomys tridecemlineatus ENSSTOG00000015523 N 0.000
TCF23 Tursiops truncatus ENSTTRG00000005255 N 0.000
e_gw.78.156.1 Branchiostoma floridae e_gw.78.156.1 N 0.000
e_gw.78.157.1 Branchiostoma floridae e_gw.78.157.1 N 0.000
gw.78.158.1 Branchiostoma floridae gw.78.158.1 N 0.000
LotgiG70568 Lottia gigantea LotgiG70568 N 0.000
Sakowv30044060m.g Saccoglossus kowalevskii Sakowv30044060m.g N 0.000
SPU_016445 Strongylocentrotus purpuratus SPU_016445 N 0.000