Sjc_0117050 (Schistosoma japonicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Sjc_0117050 T230201_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN

NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.667 0.378
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN

NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.667 0.378
VSX1
M04941_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.667 0.378
VSX1
M04944_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.667 0.378
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN

NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.667 0.378
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN

NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.667 0.378
VSX1
M04943_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.667 0.378
VSX1
M04945_2.00
Homo sapiens
NTAATTRG

CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.667 0.378
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.667 0.378
VAX1
M03168_2.00
Homo sapiens
YTAATKAN

NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.663 0.422
VAX1
M05182_2.00
Homo sapiens
BTAATTRN

NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.663 0.422
VAX1
M05183_2.00
Homo sapiens
BTMATKRN

NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.663 0.422
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000010997 Homeodomain 409 453

Links

Other Homeodomain family TFs
Other Schistosoma japonicum TFs

1214 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30131.m007263 Ricinus communis 30131.m007263 I 0.000
BGIOSGA014092 Oryza indica BGIOSGA014092 N 0.000
Bra009346 Brassica rapa Bra009346 I 0.000
BRADI5G26110 Brachypodium distachyon BRADI5G26110 N 0.000
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.000
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.000
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.000
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.000
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.000
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.000
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.000
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.000
GSMUA_Achr9G21870_001 Musa acuminata GSMUA_Achr9G21870_001 N 0.000
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.000
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.000
LPERR04G25100 Leersia perrieri LPERR04G25100 N 0.000
OB04G36550 Oryza brachyantha OB04G36550 N 0.000
OBART04G29570 Oryza barthii OBART04G29570 N 0.000
OGLUM04G29490 Oryza glumaepatula OGLUM04G29490 N 0.000
OMERI04G25000 Oryza meridionalis OMERI04G25000 N 0.000
ONIVA04G28100 Oryza nivara ONIVA04G28100 N 0.000
OPUNC04G27130 Oryza punctata OPUNC04G27130 N 0.000
ORGLA04G0258700 Oryza glaberrima ORGLA04G0258700 N 0.000
ORUFI04G31270 Oryza rufipogon ORUFI04G31270 N 0.000
OS04G0676700 Oryza sativa OS04G0676700 N 0.000
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.000
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.000
PK13672.1 Cannabis sativa PK13672.1 I 0.000
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.000
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.000
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.000
Si022762m.g Setaria italica Si022762m.g N 0.000
TCM_007672 Theobroma cacao TCM_007672 I 0.000
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.000