TF Information

SMU15005705 *(Schmidtea mediterranea)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	SMU15005705	T230219_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
so M02117_2.00	Drosophila melanogaster	NDATMYNNN	NNNRKATHN	PBM Weirauch et al.(2014) pTH5690	0.614	0.518
so M03800_2.00	Drosophila melanogaster	NYGATAYB	VRTATCRN	SELEX Nitta et al.(2015) so_1	0.614	0.518
so M03801_2.00	Drosophila melanogaster	YKATAYNNNYGATAY	RTATCRNNNRTATMR	SELEX Nitta et al.(2015) so_2	0.614	0.518
so M03802_2.00	Drosophila melanogaster	YGATACGTATCR	YGATACGTATCR	SELEX Nitta et al.(2015) so_3	0.614	0.518
so M03803_2.00	Drosophila melanogaster	RTATCRYGATAC	GTATCRYGATAY	SELEX Nitta et al.(2015) so_4	0.614	0.518
so M06497_2.00	Drosophila melanogaster	TGATAC	GTATCA	B1H Mathelier et al.(2014) MA0246.1	0.614	0.518
so M06268_2.00	Drosophila melanogaster	NRTGATA	TATCAYN	B1H Zhu et al.(2011) So_Cell_FBgn0003460	0.614	0.518
so M06269_2.00	Drosophila melanogaster	NNNTGATA	TATCANNN	B1H Zhu et al.(2011) So_SOLEXA_FBgn0003460	0.614	0.518
Six2 M00425_2.00	Mus musculus	NNAYMYNN	NNRKRTNN	PBM Berger et al.(2008) Six2_2307	0.614	0.500
Six1 M00512_2.00	Mus musculus	NNDATMYNNN	NNNRKATHNN	PBM Berger et al.(2008) Six1_0935	0.614	0.500
SIX1 M05094_2.00	Homo sapiens	NNYGATACVB	VBGTATCRNN	SELEX Yin et al.(2017) SIX1_eDBD_HT-SELEX	0.614	0.500
SIX1 M05096_2.00	Homo sapiens	NNYGATAYVB	VBRTATCRNN	SELEX Yin et al.(2017) SIX1_FL_HT-SELEX	0.614	0.500
SIX2 M05285_2.00	Homo sapiens	NNYGATACSB	VSGTATCRNN	SELEX Yin et al.(2017) SIX2_eDBD_HT-SELEX	0.614	0.500
SIX2 M05287_2.00	Homo sapiens	NSGTRWCRYN	NRYGWYACSN	SELEX Yin et al.(2017) SIX2_FL_HT-SELEX	0.614	0.500
SIX1 M08130_2.00	Homo sapiens	GWAACCTGANM	KNTCAGGTTWC	ChIP-seq Mathelier et al.(2014) MA1118.1	0.614	0.500
SIX2 M08133_2.00	Homo sapiens	NNNTGWAACCTGAKMH	DKMTCAGGTTWCANNN	ChIP-seq Mathelier et al.(2014) MA1119.1	0.614	0.500
SIX1 M09142_2.00	Homo sapiens	DGWAAYHTGABMYN	NRKVTCADRTTWCH	Misc Kulakovskiy et al.(2013) SIX1_HUMAN.H11MO.0.A	0.614	0.500
SIX2 M09157_2.00	Homo sapiens	DGWAAYHHGABMH	DKVTCDDRTTWCH	Misc Kulakovskiy et al.(2013) SIX2_HUMAN.H11MO.0.A	0.614	0.500
Six2 M09185_2.00	Mus musculus	DGWAAYHYRABMYB	VRKVTYRDRTTWCH	Misc Kulakovskiy et al.(2013) SIX2_MOUSE.H11MO.0.A	0.614	0.500
Six1 M09579_2.00	Mus musculus	GWAAYHTGABMH	DKVTCADRTTWC	Misc Heinz et al.(2010) Myoblast-Six1_GSE20150	0.614	0.500
SIX1 M10684_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SIX1_Q3_01	0.614	0.500
SIX1 M10685_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SIX1_Q3	0.614	0.500
SIX1 M05095_2.00	Homo sapiens	NNYGATABNB	VNVTATCRNN	SELEX Yin et al.(2017) SIX1_eDBD_Methyl-HT-SELEX	0.614	0.500
SIX1 M05097_2.00	Homo sapiens	NNYGATAYSB	VSRTATCRNN	SELEX Yin et al.(2017) SIX1_FL_Methyl-HT-SELEX	0.614	0.500
SIX2 M05286_2.00	Homo sapiens	NBRTATCRNN	NNYGATAYVN	SELEX Yin et al.(2017) SIX2_eDBD_Methyl-HT-SELEX	0.614	0.500
SIX2 M05288_2.00	Homo sapiens	VBRTAWCRNN	NNYGWTAYVB	SELEX Yin et al.(2017) SIX2_FL_Methyl-HT-SELEX	0.614	0.500
SIX6 M00326_2.00	Homo sapiens	NNDATMB	VKATHNN	PBM Barrera et al.(2016) SIX6_REF	0.612	0.536
Six6 M00169_2.00	Mus musculus	NNAYMNN	NNKRTNN	PBM Badis et al.(2009) Six6_2267	0.612	0.536
Six6 M00412_2.00	Mus musculus	NNNTGATAYCN	NGRTATCANNN	PBM Berger et al.(2008) Six6_2267	0.612	0.536
Six3 M00483_2.00	Mus musculus	NNNAYMN	NKRTNNN	PBM Berger et al.(2008) Six3_1732	0.612	0.536
six3 M02102_2.00	Oryzias latipes	NNDAYMBNNN	NNNVKRTHNN	PBM Weirauch et al.(2014) pTH5928	0.612	0.536
Optix M02124_2.00	Drosophila melanogaster	NNNNNDATMN	NKATHNNNNN	PBM Weirauch et al.(2014) pTH5437	0.612	0.536
Optix M03850_2.00	Drosophila melanogaster	TAATYTAATTA	TAATTARATTA	SELEX Nitta et al.(2015) Optix_1	0.612	0.536
SIX3 M05159_2.00	Homo sapiens	NNYGATABBN	NVVTATCRNN	SELEX Yin et al.(2017) SIX3_eDBD_HT-SELEX	0.612	0.536
SIX6 M05357_2.00	Homo sapiens	NNYGATASVB	VBSTATCRNN	SELEX Yin et al.(2017) SIX6_eDBD_HT-SELEX	0.612	0.536
Optix M06526_2.00	Drosophila melanogaster	TGATA	TATCA	B1H Mathelier et al.(2014) MA0199.1	0.612	0.536
Optix M06327_2.00	Drosophila melanogaster	HHVTGATA	TATCABDD	B1H Zhu et al.(2011) Optix_Cell_FBgn0025360	0.612	0.536
Optix M06328_2.00	Drosophila melanogaster	NNNTGATA	TATCANNN	B1H Zhu et al.(2011) Optix_SOLEXA_FBgn0025360	0.612	0.536
SIX3 M10698_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SIX3_Q6	0.612	0.536
SIX6 M00325_2.00	Homo sapiens	NNNDATMB	VKATHNNN	PBM Barrera et al.(2016) SIX6_H141N	0.612	0.536
SIX3 M05160_2.00	Homo sapiens	NNYGATABVB	VBVTATCRNN	SELEX Yin et al.(2017) SIX3_eDBD_Methyl-HT-SELEX	0.612	0.536
SIX6 M05358_2.00	Homo sapiens	VBVYAYCRNN	NNYGRTRBVB	SELEX Yin et al.(2017) SIX6_eDBD_Methyl-HT-SELEX	0.612	0.536
SIX6 M00327_2.00	Homo sapiens	NHDAYMBNN	NNVKRTHDN	PBM Barrera et al.(2016) SIX6_T165A	0.606	0.518
For this family, TFs with SR scores > 0.599* will likely have a similar motif*