CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMU15005705
(
Schmidtea mediterranea
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
SMU15005705
T230219_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
so
M02117_2.00
Drosophila melanogaster
NDATMYNNN
NNNRKATHN
PBM
Weirauch et al.(2014)
pTH5690
0.614
0.518
so
M03800_2.00
Drosophila melanogaster
NYGATAYB
VRTATCRN
SELEX
Nitta et al.(2015)
so_1
0.614
0.518
so
M03801_2.00
Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR
SELEX
Nitta et al.(2015)
so_2
0.614
0.518
so
M03802_2.00
Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR
SELEX
Nitta et al.(2015)
so_3
0.614
0.518
so
M03803_2.00
Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY
SELEX
Nitta et al.(2015)
so_4
0.614
0.518
so
M06497_2.00
Drosophila melanogaster
TGATAC
GTATCA
B1H
Mathelier et al.(2014)
MA0246.1
0.614
0.518
so
M06268_2.00
Drosophila melanogaster
NRTGATA
TATCAYN
B1H
Zhu et al.(2011)
So_Cell_FBgn0003460
0.614
0.518
so
M06269_2.00
Drosophila melanogaster
NNNTGATA
TATCANNN
B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460
0.614
0.518
Six2
M00425_2.00
Mus musculus
NNAYMYNN
NNRKRTNN
PBM
Berger et al.(2008)
Six2_2307
0.614
0.500
Six1
M00512_2.00
Mus musculus
NNDATMYNNN
NNNRKATHNN
PBM
Berger et al.(2008)
Six1_0935
0.614
0.500
SIX1
M05094_2.00
Homo sapiens
NNYGATACVB
VBGTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX
0.614
0.500
SIX1
M05096_2.00
Homo sapiens
NNYGATAYVB
VBRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX
0.614
0.500
SIX2
M05285_2.00
Homo sapiens
NNYGATACSB
VSGTATCRNN
SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX
0.614
0.500
SIX2
M05287_2.00
Homo sapiens
NSGTRWCRYN
NRYGWYACSN
SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX
0.614
0.500
SIX1
M08130_2.00
Homo sapiens
GWAACCTGANM
KNTCAGGTTWC
ChIP-seq
Mathelier et al.(2014)
MA1118.1
0.614
0.500
SIX2
M08133_2.00
Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN
ChIP-seq
Mathelier et al.(2014)
MA1119.1
0.614
0.500
SIX1
M09142_2.00
Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A
0.614
0.500
SIX2
M09157_2.00
Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A
0.614
0.500
Six2
M09185_2.00
Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH
Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A
0.614
0.500
Six1
M09579_2.00
Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC
Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150
0.614
0.500
SIX1
M10684_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3_01
0.614
0.500
SIX1
M10685_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX1_Q3
0.614
0.500
SIX1
M05095_2.00
Homo sapiens
NNYGATABNB
VNVTATCRNN
SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX
0.614
0.500
SIX1
M05097_2.00
Homo sapiens
NNYGATAYSB
VSRTATCRNN
SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX
0.614
0.500
SIX2
M05286_2.00
Homo sapiens
NBRTATCRNN
NNYGATAYVN
SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX
0.614
0.500
SIX2
M05288_2.00
Homo sapiens
VBRTAWCRNN
NNYGWTAYVB
SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX
0.614
0.500
SIX6
M00326_2.00
Homo sapiens
NNDATMB
VKATHNN
PBM
Barrera et al.(2016)
SIX6_REF
0.612
0.536
Six6
M00169_2.00
Mus musculus
NNAYMNN
NNKRTNN
PBM
Badis et al.(2009)
Six6_2267
0.612
0.536
Six6
M00412_2.00
Mus musculus
NNNTGATAYCN
NGRTATCANNN
PBM
Berger et al.(2008)
Six6_2267
0.612
0.536
Six3
M00483_2.00
Mus musculus
NNNAYMN
NKRTNNN
PBM
Berger et al.(2008)
Six3_1732
0.612
0.536
six3
M02102_2.00
Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN
PBM
Weirauch et al.(2014)
pTH5928
0.612
0.536
Optix
M02124_2.00
Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN
PBM
Weirauch et al.(2014)
pTH5437
0.612
0.536
Optix
M03850_2.00
Drosophila melanogaster
TAATYTAATTA
TAATTARATTA
SELEX
Nitta et al.(2015)
Optix_1
0.612
0.536
SIX3
M05159_2.00
Homo sapiens
NNYGATABBN
NVVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX
0.612
0.536
SIX6
M05357_2.00
Homo sapiens
NNYGATASVB
VBSTATCRNN
SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX
0.612
0.536
Optix
M06526_2.00
Drosophila melanogaster
TGATA
TATCA
B1H
Mathelier et al.(2014)
MA0199.1
0.612
0.536
Optix
M06327_2.00
Drosophila melanogaster
HHVTGATA
TATCABDD
B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360
0.612
0.536
Optix
M06328_2.00
Drosophila melanogaster
NNNTGATA
TATCANNN
B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360
0.612
0.536
SIX3
M10698_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIX3_Q6
0.612
0.536
SIX6
M00325_2.00
Homo sapiens
NNNDATMB
VKATHNNN
PBM
Barrera et al.(2016)
SIX6_H141N
0.612
0.536
SIX3
M05160_2.00
Homo sapiens
NNYGATABVB
VBVTATCRNN
SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX
0.612
0.536
SIX6
M05358_2.00
Homo sapiens
VBVYAYCRNN
NNYGRTRBVB
SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX
0.612
0.536
SIX6
M00327_2.00
Homo sapiens
NHDAYMBNN
NNVKRTHDN
PBM
Barrera et al.(2016)
SIX6_T165A
0.606
0.518
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15005705
Homeodomain
105
160
NKSHCFQEEIRKFLHHKYLKDPFPTSNMKKDMSSFTGLSVMQVSNWFKNRRQRDRA
Links
Other
Homeodomain
family TFs
Other
Schmidtea mediterranea
TFs
558 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy