CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMU15011671
(
Schmidtea mediterranea
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
SMU15011671
T230224_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nkx1-1
M00442_2.00
Mus musculus
NNTAATNDNN
NNHNATTANN
PBM
Berger et al.(2008)
Nkx1-1_3856
0.387
1.000
Nkx1-2
M00503_2.00
Mus musculus
NNTAAWNDN
NHNWTTANN
PBM
Berger et al.(2008)
Nkx1-2_3214
0.387
1.000
slou
M00557_2.00
Drosophila melanogaster
NNTAATDRN
NYHATTANN
PBM
Busser et al.(2012a)
Slou
0.387
1.000
NK7.1
M03847_2.00
Drosophila melanogaster
VTTAAAYGDTD
HAHCRTTTAAB
SELEX
Nitta et al.(2015)
NK7.1_1
0.387
1.000
NK7.1
M03848_2.00
Drosophila melanogaster
NSTTAATTGVY
RBCAATTAASN
SELEX
Nitta et al.(2015)
NK7.1_2
0.387
1.000
slou
M03798_2.00
Drosophila melanogaster
VBTAATTRSB
VSYAATTAVB
SELEX
Nitta et al.(2015)
slou_1
0.387
1.000
slou
M06494_2.00
Drosophila melanogaster
YTAATKR
YMATTAR
B1H
Mathelier et al.(2014)
MA0245.1
0.387
1.000
NK7.1
M06524_2.00
Drosophila melanogaster
TTAATDR
YHATTAA
B1H
Mathelier et al.(2014)
MA0196.1
0.387
1.000
NK7.1
M06323_2.00
Drosophila melanogaster
NTTAATDR
YHATTAAN
B1H
Zhu et al.(2011)
NK7.1_Cell_FBgn0024321
0.387
1.000
NK7.1
M06324_2.00
Drosophila melanogaster
YTAATDR
YHATTAR
B1H
Zhu et al.(2011)
NK7.1_SOLEXA_FBgn0024321
0.387
1.000
slou
M06262_2.00
Drosophila melanogaster
BYTAATKR
YMATTARV
B1H
Zhu et al.(2011)
Slou_Cell_FBgn0002941
0.387
1.000
slou
M06263_2.00
Drosophila melanogaster
HTAATKR
YMATTAD
B1H
Zhu et al.(2011)
Slou_SOLEXA_FBgn0002941
0.387
1.000
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15011671
Homeodomain
1
16
TQVKIWFQNRRTKWKK
Links
Other
Homeodomain
family TFs
Other
Schmidtea mediterranea
TFs
818 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy