CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMU15029512
(
Schmidtea mediterranea
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
SMU15029512
T230279_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Dbx1
M00451_2.00
Mus musculus
WTTAATTA
TAATTAAW
PBM
Berger et al.(2008)
Dbx1_3486
0.709
0.768
Dbx2
M00499_2.00
Mus musculus
NNDTNNN
NNNAHNN
PBM
Berger et al.(2008)
Dbx2_3487
0.684
0.696
Dbx
M02128_2.00
Drosophila melanogaster
WTTAATTA
TAATTAAW
PBM
Weirauch et al.(2014)
pTH6051
0.672
0.786
Dbx
M06550_2.00
Drosophila melanogaster
TTWATKA
TMATWAA
B1H
Mathelier et al.(2014)
MA0174.1
0.672
0.786
Q0N4H2_NEMVE
M02163_2.00
Nematostella vectensis
TAATYRVT
ABYRATTA
PBM
Weirauch et al.(2014)
pTH6303
0.633
0.429
Q0N4H7_NEMVE
M02164_2.00
Nematostella vectensis
NNDAYNDNNN
NNNHNRTHNN
PBM
Weirauch et al.(2014)
pTH6472
0.625
0.500
NEMVEDRAFT_v1g114268
M02145_2.00
Nematostella vectensis
WTAATBGRT
AYCVATTAW
PBM
Weirauch et al.(2014)
pTH6514
0.619
0.464
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15029512
Homeodomain
142
197
LRRSVFSDSQRKGLEIAFKKHPYITKPDRKELAEELCLKDSQVKIWFQNRRMKWRN
Links
Other
Homeodomain
family TFs
Other
Schmidtea mediterranea
TFs
208 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SMU15032021
Schmidtea mediterranea
SMU15032021
I
0.847
HelroG74087
Helobdella robusta
HelroG74087
I
0.847
EFV57815
Trichinella spiralis
EFV57815
I
0.788
D917_00900
Trichinella nativa
D917_00900
I
0.788
ENSLACG00000011299
Latimeria chalumnae
ENSLACG00000011299
I
0.709
dbx1b
Tetraodon nigroviridis
ENSTNIG00000009613
I
0.709
ENSSTOG00000015557
Ictidomys tridecemlineatus
ENSSTOG00000015557
I
0.709
DBX1
Taeniopygia guttata
ENSTGUG00000015791
I
0.709
ENSLOCG00000004886
Lepisosteus oculatus
ENSLOCG00000004886
I
0.709
DBX1
Loxodonta africana
ENSLAFG00000007378
I
0.709
dbx1b
Takifugu rubripes
ENSTRUG00000015886
I
0.709
ENSXMAG00000006476
Xiphophorus maculatus
ENSXMAG00000006476
I
0.709
LotgiG64310
Lottia gigantea
LotgiG64310
I
0.709
DBX1
Homo sapiens
ENSG00000109851
I
0.709
ENSGACG00000000220
Gasterosteus aculeatus
ENSGACG00000000220
I
0.709
DBX1
Gallus gallus
ENSGALG00000003965
I
0.709
DBX1
Sus scrofa
ENSSSCG00000013350
I
0.709
ENSXMAG00000010186
Xiphophorus maculatus
ENSXMAG00000010186
I
0.709
ENSGMOG00000003244
Gadus morhua
ENSGMOG00000003244
I
0.709
Dbx1
Rattus norvegicus
ENSRNOG00000014706
I
0.709
dbx1b
Oryzias latipes
ENSORLG00000000807
I
0.709
DBX1
Oryzias latipes
ENSORLG00000014512
I
0.709
Dbx1
Mus musculus
ENSMUSG00000030507
D
0.709
ENSOARG00000008379
Ovis aries
ENSOARG00000008379
I
0.709
ENSONIG00000012709
Oreochromis niloticus
ENSONIG00000012709
I
0.709
ENSONIG00000007144
Oreochromis niloticus
ENSONIG00000007144
I
0.709
DBX1
Oryctolagus cuniculus
ENSOCUG00000007615
I
0.709
ENSMPUG00000013914
Mustela putorius furo
ENSMPUG00000013914
I
0.709
ENSPFOG00000004028
Poecilia formosa
ENSPFOG00000004028
I
0.709
DBX1
Felis catus
ENSFCAG00000028654
I
0.709
ENSSHAG00000011774
Sarcophilus harrisii
ENSSHAG00000011774
I
0.709
ENSPSIG00000012138
Pelodiscus sinensis
ENSPSIG00000012138
I
0.709
ENSPMAG00000004878
Petromyzon marinus
ENSPMAG00000004878
I
0.709
ENSPFOG00000014727
Poecilia formosa
ENSPFOG00000014727
I
0.709
DBX1
Monodelphis domestica
ENSMODG00000009081
I
0.709
ENSMGAG00000002299
Meleagris gallopavo
ENSMGAG00000002299
I
0.709
ENSFALG00000001676
Ficedula albicollis
ENSFALG00000001676
I
0.709
DBX1
Bos taurus
ENSBTAG00000002733
I
0.709
ENSAPLG00000013752
Anas platyrhynchos
ENSAPLG00000013752
I
0.709
fgenesh2_pg.scaffold_222000058
Branchiostoma floridae
fgenesh2_pg.scaffold_222000058
I
0.709
Tal_R010631
Tyto alba
Tal_R010631
I
0.709
ENSBTAP00000003543-D1
Bos grunniens
ENSBTAP00000003543-D1
I
0.709
Pvit_06412
Pogona vitticeps
Pvit_06412
I
0.709
Ocbimv22005553m.g
Octopus bimaculoides
Ocbimv22005553m.g
I
0.709
ENSAMXG00000016737
Astyanax mexicanus
ENSAMXG00000016737
I
0.709
CGI_10002480
Crassostrea gigas
CGI_10002480
I
0.709
CapteG220261
Capitella teleta
CapteG220261
I
0.709
dbx1.S
Xenopus laevis
XB-GENE-865351
I
0.709
dbx1
Xenopus tropicalis
XB-GENE-480177
I
0.709
ENSAMXG00000012905
Astyanax mexicanus
ENSAMXG00000012905
I
0.709
DBX1
Anolis carolinensis
ENSACAG00000015625
I
0.709
Cmyd_10016425
Chelonia mydas
Cmyd_10016425
I
0.709
DBX1
Callithrix jacchus
ENSCJAG00000006734
I
0.709
Afo_R010414
Aptenodytes forsteri
Afo_R010414
I
0.709
Alligator_sinensis_CCG013033.1
Alligator sinensis
Alligator_sinensis_CCG013033.1
I
0.709
DBX1
Equus caballus
ENSECAG00000019994
I
0.709
Aan_R006646
Calypte anna
Aan_R006646
I
0.709
DBX1
Otolemur garnettii
ENSOGAG00000014591
I
0.709
dbx1a
Danio rerio
ENSDARG00000086393
I
0.709
DBX1
Dasypus novemcinctus
ENSDNOG00000015450
I
0.709
dbx1b
Danio rerio
ENSDARG00000001859
I
0.709
ENSCSAG00000005115
Chlorocebus sabaeus
ENSCSAG00000005115
I
0.709
Brh_R002799
Buceros rhinoceros
Brh_R002799
I
0.709
DBX1
Tetraodon nigroviridis
ENSTNIG00000004855
I
0.707
DBX1
Cavia porcellus
ENSCPOG00000019811
I
0.705
nRc.2.0.1.g17174
Romanomermis culicivorax
nRc.2.0.1.g17174
I
0.704
BGLB013811
Biomphalaria glabrata
BGLB013811
I
0.704
DBX1
Gasterosteus aculeatus
ENSGACG00000014112
I
0.704
ENSCING00000012835
Ciona intestinalis
ENSCING00000012835
I
0.704
Sakowv30044972m.g
Saccoglossus kowalevskii
Sakowv30044972m.g
I
0.704
TriadG18102
Trichoplax adhaerens
TriadG18102
I
0.701
CABZ01093502.1
Danio rerio
ENSDARG00000105053
I
0.695
ENSTNIG00000015979
Tetraodon nigroviridis
ENSTNIG00000015979
I
0.692
DBX2
Monodelphis domestica
ENSMODG00000018530
I
0.687
ENSSHAG00000012659
Sarcophilus harrisii
ENSSHAG00000012659
I
0.687
ENSMEUG00000016510
Macropus eugenii
ENSMEUG00000016510
I
0.687
DBX2
Gorilla gorilla
ENSGGOG00000004664
I
0.684
ENSAMEG00000015811
Ailuropoda melanoleuca
ENSAMEG00000015811
I
0.684
DBX2
Gallus gallus
ENSGALG00000009604
I
0.684
DBX2
Bos taurus
ENSBTAG00000006635
I
0.684
Aan_R012348
Calypte anna
Aan_R012348
I
0.684
ENSVPAG00000000460
Vicugna pacos
ENSVPAG00000000460
I
0.684
ENSTSYG00000001451
Tarsius syrichta
ENSTSYG00000001451
I
0.684
DBX2
Tursiops truncatus
ENSTTRG00000003582
I
0.684
ENSCAFG00000009372
Canis familiaris
ENSCAFG00000009372
I
0.684
DBX2
Homo sapiens
ENSG00000185610
I
0.684
DBX2
Otolemur garnettii
ENSOGAG00000008999
I
0.684
Pvit_11516
Pogona vitticeps
Pvit_11516
I
0.684
ENSCPOG00000011069
Cavia porcellus
ENSCPOG00000011069
I
0.684
DBX2
Callithrix jacchus
ENSCJAG00000013213
I
0.684
Brh_R003637
Buceros rhinoceros
Brh_R003637
I
0.684
Afo_R000355
Aptenodytes forsteri
Afo_R000355
I
0.684
DBX2
Dasypus novemcinctus
ENSDNOG00000046429
I
0.684
ENSAPLG00000011161
Anas platyrhynchos
ENSAPLG00000011161
I
0.684
ENSP00000331470-D1
Bos grunniens
ENSP00000331470-D1
I
0.684
ENSACAG00000002581
Anolis carolinensis
ENSACAG00000002581
I
0.684
ENSLACG00000003968
Latimeria chalumnae
ENSLACG00000003968
I
0.684
Myotis_brandtii_DBX2_10029487
Myotis brandtii
Myotis_brandtii_DBX2_10029487
I
0.684
Gfo_R004056
Geospiza fortis
Gfo_R004056
I
0.684
ENSP00000331470
Macaca fascicularis
ENSP00000331470
I
0.684
Tal_R005491
Tyto alba
Tal_R005491
I
0.684
DBX2
Taeniopygia guttata
ENSTGUG00000006020
I
0.684
dbx2.L
Xenopus laevis
XB-GENE-6486281
I
0.684
ENSMMUG00000022290
Macaca mulatta
ENSMMUG00000022290
I
0.684
ENSPPYG00000004431
Pongo abelii
ENSPPYG00000004431
I
0.684
ENSOCUG00000022068
Oryctolagus cuniculus
ENSOCUG00000022068
I
0.684
ENSMPUG00000000372
Mustela putorius furo
ENSMPUG00000000372
I
0.684
DBX2
Procavia capensis
ENSPCAG00000006299
I
0.684
ENSNLEG00000017924
Nomascus leucogenys
ENSNLEG00000017924
I
0.684
dbx2
Xenopus tropicalis
XB-GENE-481734
I
0.684
Dbx2
Mus musculus
ENSMUSG00000045608
D
0.684
ENSPANG00000005953
Papio anubis
ENSPANG00000005953
I
0.684
ENSMLUG00000007038
Myotis lucifugus
ENSMLUG00000007038
I
0.684
DBX2
Pan troglodytes
ENSPTRG00000004849
I
0.684
ENSFALG00000010170
Ficedula albicollis
ENSFALG00000010170
I
0.684
DBX2
Tupaia belangeri
ENSTBEG00000012639
I
0.684
DBX2
Equus caballus
ENSECAG00000012695
I
0.684
DBX2
Loxodonta africana
ENSLAFG00000005006
I
0.684
ENSSTOG00000000232
Ictidomys tridecemlineatus
ENSSTOG00000000232
I
0.684
ENSMGAG00000009614
Meleagris gallopavo
ENSMGAG00000009614
I
0.684
Dbx2
Rattus norvegicus
ENSRNOG00000006885
I
0.684
ENSMICG00000007764
Microcebus murinus
ENSMICG00000007764
I
0.684
ENSSARG00000007797
Sorex araneus
ENSSARG00000007797
I
0.684
ENSOARG00000019598
Ovis aries
ENSOARG00000019598
I
0.684
ENSPSIG00000009557
Pelodiscus sinensis
ENSPSIG00000009557
I
0.683
ENSAMXG00000014548
Astyanax mexicanus
ENSAMXG00000014548
I
0.682
tetur05g09190
Tetranychus urticae
tetur05g09190
I
0.682
ENSTRUG00000016696
Takifugu rubripes
ENSTRUG00000016696
I
0.680
ENSGACG00000004000
Gasterosteus aculeatus
ENSGACG00000004000
I
0.680
ENSORLG00000002970
Oryzias latipes
ENSORLG00000002970
I
0.680
ENSONIG00000008764
Oreochromis niloticus
ENSONIG00000008764
I
0.680
ENSLOCG00000016431
Lepisosteus oculatus
ENSLOCG00000016431
I
0.680
ENSPFOG00000008292
Poecilia formosa
ENSPFOG00000008292
I
0.680
ENSXMAG00000004689
Xiphophorus maculatus
ENSXMAG00000004689
I
0.680
ENSGMOG00000009056
Gadus morhua
ENSGMOG00000009056
I
0.680
PHUM365830
Pediculus humanus
PHUM365830
I
0.672
AATE018929
Anopheles atroparvus
AATE018929
I
0.672
TC015146
Tribolium castaneum
TC015146
I
0.672
YQE_05944
Dendroctonus ponderosae
YQE_05944
I
0.672
GE21201
Drosophila yakuba
FBgn0238476
I
0.672
GM14459
Drosophila sechellia
FBgn0169382
I
0.672
GL25317
Drosophila persimilis
FBgn0162901
I
0.672
GJ12089
Drosophila virilis
FBgn0199341
I
0.672
GK12528
Drosophila willistoni
FBgn0214538
I
0.672
Dbx
Drosophila melanogaster
FBgn0261723
D
0.672
GI13319
Drosophila mojavensis
FBgn0136076
I
0.672
GH16166
Drosophila grimshawi
FBgn0123637
I
0.672
AAEL005974
Aedes aegypti
AAEL005974
I
0.672
GA11582
Drosophila pseudoobscura
FBgn0071633
I
0.672
GF20095
Drosophila ananassae
FBgn0097102
I
0.672
GG14836
Drosophila erecta
FBgn0107091
I
0.672
KGM_12383
Danaus plexippus
KGM_12383
I
0.672
ACOM031223
Anopheles coluzzii
ACOM031223
I
0.672
AGAP005727
Anopheles gambiae
AGAP005727
I
0.672
LLOJ006552
Lutzomyia longipalpis
LLOJ006552
I
0.672
ACYPI27939
Acyrthosiphon pisum
ACYPI27939
I
0.672
AMEM006151
Anopheles merus
AMEM006151
I
0.672
MDOA015219
Musca domestica
MDOA015219
I
0.672
ISCW020093
Ixodes scapularis
ISCW020093
I
0.670
GB49362
Apis mellifera
GB49362
I
0.670
NV18099
Nasonia vitripennis
NV18099
I
0.670
ENSEEUG00000006518
Erinaceus europaeus
ENSEEUG00000006518
I
0.668
DAPPUDRAFT_37379
Daphnia pulex
DAPPUDRAFT_37379
I
0.667
SPER_0001880401
Spirometra erinaceieuropaei
SPER_0001880401
I
0.651
DILT_0000534401
Diphyllobothrium latum
DILT_0000534401
I
0.651
SSLN_0001304301
Schistocephalus solidus
SSLN_0001304301
I
0.651
SPER_0003105501
Spirometra erinaceieuropaei
SPER_0003105501
I
0.651
ENSLACG00000015207
Latimeria chalumnae
ENSLACG00000015207
I
0.647
ENSCSAVG00000011424
Ciona savignyi
ENSCSAVG00000011424
N
0.645
HMEL025049
Heliconius melpomene
HMEL025049
I
0.644
NEMVEDRAFT_v1g47235
Nematostella vectensis
NEMVEDRAFT_v1g47235
I
0.642
gw.473.22.1
Branchiostoma floridae
gw.473.22.1
I
0.642
NEMVEDRAFT_v1g114232
Nematostella vectensis
NEMVEDRAFT_v1g114232
I
0.642
A_02406
Schistosoma haematobium
A_02406
I
0.639
SCUD_0001655801
Schistosoma curassoni
SCUD_0001655801
I
0.639
T265_09780
Opisthorchis viverrini
T265_09780
I
0.639
csin102876
Clonorchis sinensis
csin102876
I
0.639
D915_05896
Fasciola hepatica
D915_05896
I
0.639
PXEA_0002165701
Protopolystoma xenopodis
PXEA_0002165701
I
0.639
EmuJ_000915650
Echinococcus multilocularis
EmuJ_000915650
I
0.639
TTAC_0000915701
Hydatigera taeniaeformis
TTAC_0000915701
I
0.639
ECANG7_06581
Echinococcus canadensis
ECANG7_06581
I
0.639
SMRZ_0000721601
Schistosoma margrebowiei
SMRZ_0000721601
I
0.639
Sjc_0105010
Schistosoma japonicum
Sjc_0105010
I
0.639
TASK_0000469001
Taenia asiatica
TASK_0000469001
I
0.639
TsM_000611800
Taenia solium
TsM_000611800
I
0.639
TsM_000892700
Taenia solium
TsM_000892700
I
0.639
SMTD_0002243101
Schistosoma mattheei
SMTD_0002243101
I
0.639
SMU15012780
Schmidtea mediterranea
SMU15012780
I
0.637
SMU15037895
Schmidtea mediterranea
SMU15037895
I
0.637
Q0N4H2_NEMVE
Nematostella vectensis
Q0N4H2_NEMVE
D
0.633
ECPE_0001225801
Echinostoma caproni
ECPE_0001225801
I
0.633
Ocbimv22023837m.g
Octopus bimaculoides
Ocbimv22023837m.g
I
0.629
Q0N4H7_NEMVE
Nematostella vectensis
Q0N4H7_NEMVE
D
0.625
NEMVEDRAFT_v1g69052
Nematostella vectensis
NEMVEDRAFT_v1g69052
I
0.621
HelroG148518
Helobdella robusta
HelroG148518
I
0.620
DAPPUDRAFT_53297
Daphnia pulex
DAPPUDRAFT_53297
I
0.620
NEMVEDRAFT_v1g80365
Nematostella vectensis
NEMVEDRAFT_v1g80365
I
0.620
LotgiG80492
Lottia gigantea
LotgiG80492
I
0.620
NEMVEDRAFT_v1g100892
Nematostella vectensis
NEMVEDRAFT_v1g100892
I
0.620
NEMVEDRAFT_v1g114268
Nematostella vectensis
NEMVEDRAFT_v1g114268
D
0.619
NEMVEDRAFT_v1g17677
Nematostella vectensis
NEMVEDRAFT_v1g17677
I
0.619
MCINX005605
Melitaea cinxia
MCINX005605
I
0.619
NEMVEDRAFT_v1g80987
Nematostella vectensis
NEMVEDRAFT_v1g80987
I
0.613
gw.83.80.1
Branchiostoma floridae
gw.83.80.1
I
0.610
KGM_13131
Danaus plexippus
KGM_13131
I
0.607
hlx
Ciona intestinalis
ENSCING00000019191
I
0.604
RPRC002486
Rhodnius prolixus
RPRC002486
I
0.418