CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMU15038487
(
Schmidtea mediterranea
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
SMU15038487
T230315_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SHOX
M02095_2.00
Homo sapiens
NTAATTRN
NYAATTAN
PBM
Weirauch et al.(2014)
pTH5805
0.692
0.789
Shox2
M00439_2.00
Mus musculus
NTAATDDN
NHHATTAN
PBM
Berger et al.(2008)
Shox2_2641
0.692
0.789
SHOX
M03232_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
SHOX_1
0.692
0.789
SHOX2
M03204_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Jolma et al.(2013)
SHOX2_1
0.692
0.789
Shox2
M03263_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Shox2_1
0.692
0.789
SHOX
M05366_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_HT-SELEX
0.692
0.789
Shox2
M10772_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SHOX2_05
0.692
0.789
SHOX
M05367_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_1
0.692
0.789
SHOX
M05368_2.00
Homo sapiens
NTAAYGAN
NTCRTTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_2
0.692
0.789
CG5369
M03876_2.00
Drosophila melanogaster
TAATTHVATTA
TAATBDAATTA
SELEX
Nitta et al.(2015)
CG5369_1
0.692
0.772
CG5369
M03877_2.00
Drosophila melanogaster
TAATTRNNTAATBN
NVATTANNYAATTA
SELEX
Nitta et al.(2015)
CG5369_2
0.692
0.772
CG5369
M03878_2.00
Drosophila melanogaster
TAATTVRATWA
TWATYBAATTA
SELEX
Nitta et al.(2015)
CG5369_3
0.692
0.772
Uncx
M00443_2.00
Mus musculus
NTAATNDN
NHNATTAN
PBM
Berger et al.(2008)
Uncx4
0.680
0.649
uncx
M02111_2.00
Tetraodon nigroviridis
NNTAATTRN
NYAATTANN
PBM
Weirauch et al.(2014)
pTH5474
0.680
0.649
UNCX
M03191_2.00
Homo sapiens
NWAATTVVRTHWN
NWDAYBBAATTWN
SELEX
Jolma et al.(2013)
UNCX_1
0.680
0.649
UNCX
M03192_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
UNCX_2
0.680
0.649
Uncx
M03264_2.00
Mus musculus
NTAATTVRATTAN
NTAATYBAATTAN
SELEX
Jolma et al.(2013)
Uncx_1
0.680
0.649
Uncx
M03265_2.00
Mus musculus
NTAATTRR
YYAATTAN
SELEX
Jolma et al.(2013)
Uncx_2
0.680
0.649
UNCX
M05240_2.00
Homo sapiens
NYAATTRV
BYAATTRN
SELEX
Yin et al.(2017)
UNCX_eDBD_HT-SELEX
0.680
0.649
UNCX
M05241_2.00
Homo sapiens
NYRRYKNN
NNMRYYRN
SELEX
Yin et al.(2017)
UNCX_eDBD_Methyl-HT-SELEX
0.680
0.649
Alx1
M00471_2.00
Mus musculus
NTAATTRN
NYAATTAN
PBM
Berger et al.(2008)
Cart1_0997
0.669
0.667
Alx1
M00472_2.00
Mus musculus
NTAATDDN
NHHATTAN
PBM
Berger et al.(2008)
Cart1_1275
0.669
0.667
ALX1
M03226_2.00
Homo sapiens
NTAATTRVRTTAN
NTAAYBYAATTAN
SELEX
Jolma et al.(2013)
CART1_1
0.669
0.667
Alx1
M03272_2.00
Mus musculus
NNTAATTRRD
HYYAATTANN
SELEX
Jolma et al.(2013)
Alx1_1
0.669
0.667
Alx1
M03273_2.00
Mus musculus
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
Alx1_2
0.669
0.667
ALX1
M05327_2.00
Homo sapiens
TAATYTAATTA
TAATTARATTA
SELEX
Yin et al.(2017)
ALX1_FL_HT-SELEX
0.669
0.667
ALX1
M09160_2.00
Homo sapiens
VTAATYRVATTA
TAATBYRATTAB
Misc
Kulakovskiy et al.(2013)
ALX1_HUMAN.H11MO.0.B
0.669
0.667
Alx1
M09201_2.00
Mus musculus
VTAATYRVATTA
TAATBYRATTAB
Misc
Kulakovskiy et al.(2013)
ALX1_MOUSE.H11MO.0.B
0.669
0.667
ALX1
M10741_2.00
Homo sapiens
VVHTAATKNNHATTABYN
NRVTAATDNNMATTADBB
Transfac
Matys et al.(2006)
V$CART1_01
0.669
0.667
ALX1
M05328_2.00
Homo sapiens
TAATYTAATTA
TAATTARATTA
SELEX
Yin et al.(2017)
ALX1_FL_Methyl-HT-SELEX
0.669
0.667
ARX
M00264_2.00
Homo sapiens
NNWRATNNN
NNNATYWNN
PBM
Barrera et al.(2016)
ARX_REF
0.667
0.702
Arx
M00467_2.00
Mus musculus
NTAATTDN
NHAATTAN
PBM
Berger et al.(2008)
Arx_1738
0.667
0.702
ARX
M03076_2.00
Homo sapiens
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
ARX_1
0.667
0.702
Arx
M03269_2.00
Mus musculus
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
Arx_1
0.667
0.702
ARX
M04895_2.00
Homo sapiens
BTAATTRR
YYAATTAV
SELEX
Yin et al.(2017)
ARX_eDBD_HT-SELEX
0.667
0.702
Arx
M10775_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ARX_05
0.667
0.702
ARX
M00265_2.00
Homo sapiens
DTAATTRK
MYAATTAH
PBM
Barrera et al.(2016)
ARX_T333N
0.667
0.702
ARX
M04896_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ARX_eDBD_Methyl-HT-SELEX
0.667
0.702
ARX
M00260_2.00
Homo sapiens
NMTAATTANNN
NNNTAATTAKN
PBM
Barrera et al.(2016)
ARX_L343Q
0.667
0.684
ARX
M00261_2.00
Homo sapiens
NNWRAYNNN
NNNRTYWNN
PBM
Barrera et al.(2016)
ARX_P353L
0.667
0.684
ARX
M00262_2.00
Homo sapiens
ATAATTAT
ATAATTAT
PBM
Barrera et al.(2016)
ARX_P353R
0.667
0.684
hbn
M03813_2.00
Drosophila melanogaster
HTAATYTAATTAD
HTAATTARATTAD
SELEX
Nitta et al.(2015)
hbn_1
0.662
0.667
hbn
M06506_2.00
Drosophila melanogaster
TTAATTR
YAATTAA
B1H
Mathelier et al.(2014)
MA0226.1
0.662
0.667
hbn
M06291_2.00
Drosophila melanogaster
TWAWTTR
YAAWTWA
B1H
Zhu et al.(2011)
Hbn_Cell_FBgn0008636
0.662
0.667
hbn
M06292_2.00
Drosophila melanogaster
NHTAATTR
YAATTADN
B1H
Zhu et al.(2011)
Hbn_SOLEXA_FBgn0008636
0.662
0.667
Pph13
M03845_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
Pph13_1
0.661
0.667
Pph13
M06522_2.00
Drosophila melanogaster
NTAATTR
YAATTAN
B1H
Mathelier et al.(2014)
MA0200.1
0.661
0.667
Pph13
M06321_2.00
Drosophila melanogaster
NHTAATTR
YAATTADN
B1H
Zhu et al.(2011)
Pph13_Cell_FBgn0023489
0.661
0.667
Pph13
M06322_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Zhu et al.(2011)
Pph13_SOLEXA_FBgn0023489
0.661
0.667
Alx4
M00487_2.00
Mus musculus
NTAATDDN
NHHATTAN
PBM
Berger et al.(2008)
Alx4_1744
0.661
0.649
ALX4
M03079_2.00
Homo sapiens
NTAATYNRRTTAN
NTAAYYNRATTAN
SELEX
Jolma et al.(2013)
ALX4_1
0.661
0.649
Alx4
M03278_2.00
Mus musculus
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
Alx4_1
0.661
0.649
ALX4
M04917_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX4_eDBD_HT-SELEX
0.661
0.649
ALX4
M10637_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ALX4_01
0.661
0.649
ALX4
M04918_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX4_eDBD_Methyl-HT-SELEX_1
0.661
0.649
ALX4
M04919_2.00
Homo sapiens
NTWAYGHN
NDCRTWAN
SELEX
Yin et al.(2017)
ALX4_eDBD_Methyl-HT-SELEX_2
0.661
0.649
Alx3
M00402_2.00
Mus musculus
WAATNDN
NHNATTW
PBM
Berger et al.(2008)
Alx3_3418
0.661
0.632
ALX3
M03172_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ALX3_1
0.661
0.632
ALX3
M03173_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ALX3_2
0.661
0.632
ALX3
M03174_2.00
Homo sapiens
NTAATYNRATTAN
NTAATYNRATTAN
SELEX
Jolma et al.(2013)
ALX3_3
0.661
0.632
ALX3
M05195_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_HT-SELEX
0.661
0.632
ALX3
M05198_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX3_FL_HT-SELEX
0.661
0.632
ALX3
M05196_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_Methyl-HT-SELEX_1
0.661
0.632
ALX3
M05197_2.00
Homo sapiens
NTAAYBHN
NDVRTTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_Methyl-HT-SELEX_2
0.661
0.632
ALX3
M05199_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ALX3_FL_Methyl-HT-SELEX_1
0.661
0.632
ALX3
M05200_2.00
Homo sapiens
NTAAYGHN
NDCRTTAN
SELEX
Yin et al.(2017)
ALX3_FL_Methyl-HT-SELEX_2
0.661
0.632
si:dkey-43p13.5
M02082_2.00
Danio rerio
DNWNWWNWNH
DNWNWWNWNH
PBM
Weirauch et al.(2014)
pTH6636
0.658
0.632
Vsx1
M00459_2.00
Mus musculus
NNTAATDDN
NHHATTANN
PBM
Berger et al.(2008)
Vsx1_1728
0.658
0.632
Vsx1
M03267_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Vsx1_1
0.658
0.632
CG32532
M03874_2.00
Drosophila melanogaster
NTAAYBNVRTTAN
NTAAYBNVRTTAN
SELEX
Nitta et al.(2015)
CG32532_1
0.658
0.632
CG32532
M06547_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Mathelier et al.(2014)
MA0179.1
0.658
0.632
CG32532
M06370_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Zhu et al.(2011)
CG32532_Cell_FBgn0052532
0.658
0.632
CG32532
M06371_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
CG32532_SOLEXA_FBgn0052532
0.658
0.632
VSX1
M00269_2.00
Homo sapiens
NNWAAYNNN
NNNRTTWNN
PBM
Barrera et al.(2016)
VSX1_REF
0.658
0.614
VSX1
M00266_2.00
Homo sapiens
NNTAAYNNN
NNNRTTANN
PBM
Barrera et al.(2016)
VSX1_G160D
0.658
0.614
VSX2
M00287_2.00
Homo sapiens
NYTAATTARN
NYTAATTARN
PBM
Barrera et al.(2016)
VSX2_REF
0.658
0.596
VSX2
M03124_2.00
Homo sapiens
YTAATTAN
NTAATTAR
SELEX
Jolma et al.(2013)
VSX2_1
0.658
0.596
VSX2
M05036_2.00
Homo sapiens
CTAATTAN
NTAATTAG
SELEX
Yin et al.(2017)
VSX2_eDBD_HT-SELEX
0.658
0.596
VSX2
M05039_2.00
Homo sapiens
GCYAATYWY
RWRATTRGC
SELEX
Yin et al.(2017)
VSX2_FL_HT-SELEX
0.658
0.596
Vsx2
M09180_2.00
Mus musculus
NNRGCTAATTAR
YTAATTAGCYNN
Misc
Kulakovskiy et al.(2013)
VSX2_MOUSE.H11MO.0.C
0.658
0.596
VSX2
M10676_2.00
Homo sapiens
HNNGCTAATTANBN
NVNTAATTAGCNND
Transfac
Matys et al.(2006)
V$CHX10_01
0.658
0.596
VSX2
M05037_2.00
Homo sapiens
VYAATTRR
YYAATTRB
SELEX
Yin et al.(2017)
VSX2_eDBD_Methyl-HT-SELEX_1
0.658
0.596
VSX2
M05038_2.00
Homo sapiens
NTAAYKHN
NDMRTTAN
SELEX
Yin et al.(2017)
VSX2_eDBD_Methyl-HT-SELEX_2
0.658
0.596
VSX2
M05040_2.00
Homo sapiens
NTAAYKVN
NBMRTTAN
SELEX
Yin et al.(2017)
VSX2_FL_Methyl-HT-SELEX_1
0.658
0.596
VSX2
M05041_2.00
Homo sapiens
GCYAATYWY
RWRATTRGC
SELEX
Yin et al.(2017)
VSX2_FL_Methyl-HT-SELEX_2
0.658
0.596
VSX2
M00285_2.00
Homo sapiens
NDTWTATTHNNN
NNNDAATAWAHN
PBM
Barrera et al.(2016)
VSX2_R200P
0.658
0.579
VSX2
M00286_2.00
Homo sapiens
YRWKWNN
NNWMWYR
PBM
Barrera et al.(2016)
VSX2_R200Q
0.658
0.579
CG11294
M03855_2.00
Drosophila melanogaster
TAATTVVATTA
TAATBBAATTA
SELEX
Nitta et al.(2015)
CG11294_1
0.656
0.667
CG11294
M03856_2.00
Drosophila melanogaster
TAATTDVATTA
TAATBHAATTA
SELEX
Nitta et al.(2015)
CG11294_2
0.656
0.667
CG11294
M06531_2.00
Drosophila melanogaster
TAATTAA
TTAATTA
B1H
Mathelier et al.(2014)
MA0172.1
0.656
0.667
CG11294
M06337_2.00
Drosophila melanogaster
TAATTAA
TTAATTA
B1H
Zhu et al.(2011)
CG11294_Cell_FBgn0030058
0.656
0.667
CG11294
M06338_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
CG11294_SOLEXA_FBgn0030058
0.656
0.667
SNAPOd2T00006620001
M02231_2.00
Oikopleura dioica
NTAATTRN
NYAATTAN
PBM
Weirauch et al.(2014)
pTH5666
0.655
0.737
DRGX
M03199_2.00
Homo sapiens
NTAATTNRATTAN
NTAATYNAATTAN
SELEX
Jolma et al.(2013)
DRGX_1
0.654
0.649
CG2808
M03875_2.00
Drosophila melanogaster
TAATYNSRTTA
TAAYSNRATTA
SELEX
Nitta et al.(2015)
CG2808_1
0.654
0.649
DRGX
M05253_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
DRGX_eDBD_HT-SELEX
0.654
0.649
Drgx
M10774_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRRXL1_01
0.654
0.649
DRGX
M05254_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
DRGX_eDBD_Methyl-HT-SELEX
0.654
0.649
PROP1
M00317_2.00
Homo sapiens
HAAYNNNNNN
NNNNNNRTTD
PBM
Barrera et al.(2016)
PROP1_REF
0.653
0.579
Prop1
M00498_2.00
Mus musculus
NRAKDDN
NHHMTYN
PBM
Berger et al.(2008)
Prop1_3949
0.653
0.579
PROP1
M03216_2.00
Homo sapiens
TAATTHRATTA
TAATYDAATTA
SELEX
Jolma et al.(2013)
PROP1_1
0.653
0.579
PROP1
M03217_2.00
Homo sapiens
TAATKNRRTTA
TAAYYNMATTA
SELEX
Jolma et al.(2013)
PROP1_2
0.653
0.579
PROP1
M05298_2.00
Homo sapiens
WAATTNNRTTD
HAAYNNAATTW
SELEX
Yin et al.(2017)
PROP1_eDBD_HT-SELEX
0.653
0.579
PROP1
M05301_2.00
Homo sapiens
TAATTNVATTA
TAATBNAATTA
SELEX
Yin et al.(2017)
PROP1_FL_HT-SELEX
0.653
0.579
Prop1
M09210_2.00
Mus musculus
TAATKRRATTA
TAATYYMATTA
Misc
Kulakovskiy et al.(2013)
PROP1_MOUSE.H11MO.0.C
0.653
0.579
PROP1
M10777_2.00
Sus scrofa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PROP1_01
0.653
0.579
PROP1
M10737_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PROP1_Q2
0.653
0.579
PROP1
M05299_2.00
Homo sapiens
TAATTNVRTTW
WAAYBNAATTA
SELEX
Yin et al.(2017)
PROP1_eDBD_Methyl-HT-SELEX_1
0.653
0.579
PROP1
M05300_2.00
Homo sapiens
TAAYNDCRTTA
TAAYGHNRTTA
SELEX
Yin et al.(2017)
PROP1_eDBD_Methyl-HT-SELEX_2
0.653
0.579
PROP1
M05302_2.00
Homo sapiens
TAATTNVRTTA
TAAYBNAATTA
SELEX
Yin et al.(2017)
PROP1_FL_Methyl-HT-SELEX_1
0.653
0.579
PROP1
M05303_2.00
Homo sapiens
TAATYRVRTTA
TAAYBYRATTA
SELEX
Yin et al.(2017)
PROP1_FL_Methyl-HT-SELEX_2
0.653
0.579
PROP1
M00315_2.00
Homo sapiens
NNHNATNN
NNATNDNN
PBM
Barrera et al.(2016)
PROP1_R112Q
0.653
0.561
PHDP
M03849_2.00
Drosophila melanogaster
NTAATKNVATTAN
NTAATBNMATTAN
SELEX
Nitta et al.(2015)
PHDP_1
0.653
0.684
PHDP
M06525_2.00
Drosophila melanogaster
HTAATTD
HAATTAD
B1H
Mathelier et al.(2014)
MA0457.1
0.653
0.684
PHDP
M06325_2.00
Drosophila melanogaster
HTAATT
AATTAD
B1H
Zhu et al.(2011)
PhdP_Cell_FBgn0025334
0.653
0.684
PHDP
M06326_2.00
Drosophila melanogaster
YTAATT
AATTAR
B1H
Zhu et al.(2011)
PhdP_SOLEXA_FBgn0025334
0.653
0.684
Sebox
M02097_2.00
Mus musculus
NHTTAATTAN
NTAATTAADN
PBM
Weirauch et al.(2014)
pTH6379
0.650
0.579
PHOX2B
M00282_2.00
Homo sapiens
TAATTRRY
RYYAATTA
PBM
Barrera et al.(2016)
PHOX2B_REF
0.649
0.667
Phox2a
M00400_2.00
Mus musculus
NNHAAYNN
NNRTTDNN
PBM
Berger et al.(2008)
Phox2a_3947
0.649
0.667
Phox2b
M00401_2.00
Mus musculus
NNHAAYNN
NNRTTDNN
PBM
Berger et al.(2008)
Phox2b_3948
0.649
0.667
PHOX2A
M03194_2.00
Homo sapiens
TAATTRVRTTA
TAAYBYAATTA
SELEX
Jolma et al.(2013)
PHOX2A_1
0.649
0.667
PHOX2B
M03113_2.00
Homo sapiens
TAATTRVRTTA
TAAYBYAATTA
SELEX
Jolma et al.(2013)
PHOX2B_1
0.649
0.667
PHOX2B
M03114_2.00
Homo sapiens
TAATTRVRTTA
TAAYBYAATTA
SELEX
Jolma et al.(2013)
PHOX2B_2
0.649
0.667
PHOX2A
M05244_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PHOX2A_eDBD_HT-SELEX
0.649
0.667
PHOX2B
M05008_2.00
Homo sapiens
BTAATYRV
BYRATTAV
SELEX
Yin et al.(2017)
PHOX2B_eDBD_HT-SELEX
0.649
0.667
PHOX2B
M05010_2.00
Homo sapiens
TAATTWRATTA
TAATYWAATTA
SELEX
Yin et al.(2017)
PHOX2B_FL_HT-SELEX
0.649
0.667
Phox2a
M09564_2.00
Mus musculus
NTAATBNRATTA
TAATYNVATTAN
Misc
Heinz et al.(2010)
Neuron-Phox2a_GSE31456
0.649
0.667
PHOX2A
M05245_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PHOX2A_eDBD_Methyl-HT-SELEX
0.649
0.667
PHOX2B
M05009_2.00
Homo sapiens
BTAATYRN
NYRATTAV
SELEX
Yin et al.(2017)
PHOX2B_eDBD_Methyl-HT-SELEX
0.649
0.667
PHOX2B
M05011_2.00
Homo sapiens
TAATTHRATTA
TAATYDAATTA
SELEX
Yin et al.(2017)
PHOX2B_FL_Methyl-HT-SELEX
0.649
0.667
PHOX2B
M00280_2.00
Homo sapiens
NNNHATAAWTDNN
NNHAWTTATDNNN
PBM
Barrera et al.(2016)
PHOX2B_R141G
0.649
0.649
PHOX2B
M00281_2.00
Homo sapiens
NNNNNNNNRY
RYNNNNNNNN
PBM
Barrera et al.(2016)
PHOX2B_R141Q
0.649
0.649
al
M03776_2.00
Drosophila melanogaster
TAAYBNVRTTA
TAAYBNVRTTA
SELEX
Nitta et al.(2015)
al_1
0.649
0.632
al
M06477_2.00
Drosophila melanogaster
TAATTAA
TTAATTA
B1H
Mathelier et al.(2014)
MA0208.1
0.649
0.632
al
M06212_2.00
Drosophila melanogaster
TAATTAA
TTAATTA
B1H
Zhu et al.(2011)
Al_Cell_FBgn0000061
0.649
0.632
al
M06213_2.00
Drosophila melanogaster
NNYTAATTR
YAATTARNN
B1H
Zhu et al.(2011)
Al_SOLEXA_FBgn0000061
0.649
0.632
Prrx2
M00486_2.00
Mus musculus
WRATNNN
NNNATYW
PBM
Berger et al.(2008)
Prrx2_3072
0.649
0.667
PRRX2
M03200_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX2_1
0.649
0.667
Prrx2
M03277_2.00
Mus musculus
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
Prrx2_1
0.649
0.667
PRRX2
M05262_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PRRX2_FL_HT-SELEX
0.649
0.667
PRRX2
M05258_2.00
Homo sapiens
NTNAYGHN
NDCRTNAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_1
0.649
0.667
PRRX2
M05259_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_2
0.649
0.667
PRRX2
M09156_2.00
Homo sapiens
HTAATTR
YAATTAD
Misc
Kulakovskiy et al.(2013)
PRRX2_HUMAN.H11MO.0.C
0.649
0.667
Prrx2
M09207_2.00
Mus musculus
HTAATTR
YAATTAD
Misc
Kulakovskiy et al.(2013)
PRRX2_MOUSE.H11MO.0.C
0.649
0.667
PRRX2
M10735_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRRX2_05
0.649
0.667
PRRX2
M10776_2.00
Sus scrofa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRX2_Q2
0.649
0.667
Prrx2
M10767_2.00
Mus musculus
HNVHTAATTRRNHNDW
WHNDNYYAATTADBND
Transfac
Matys et al.(2006)
V$S8_01
0.649
0.667
PRRX2
M05260_2.00
Homo sapiens
NTAAYGHN
NDCRTTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_1
0.649
0.667
PRRX2
M05261_2.00
Homo sapiens
NTAATYRN
NYRATTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_2
0.649
0.667
PRRX2
M05263_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_1
0.649
0.667
PRRX2
M05264_2.00
Homo sapiens
HTAAYGHN
NDCRTTAD
SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_2
0.649
0.667
Prrx1
M00431_2.00
Mus musculus
TAATTRNN
NNYAATTA
PBM
Berger et al.(2008)
Prrx1_3442
0.649
0.632
PRRX1
M03120_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX1_1
0.649
0.632
PRRX1
M03121_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
PRRX1_2
0.649
0.632
PRRX1
M03122_2.00
Homo sapiens
TAATTVRRTTA
TAAYYBAATTA
SELEX
Jolma et al.(2013)
PRRX1_3
0.649
0.632
Prrx1
M10770_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PMX1_01
0.649
0.632
PRRX1
M10675_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PMX1_Q6
0.649
0.632
unc-4
M03846_2.00
Drosophila melanogaster
TAATTNAATTA
TAATTNAATTA
SELEX
Nitta et al.(2015)
unc-4_1
0.647
0.632
unc-4
M06523_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Mathelier et al.(2014)
MA0250.1
0.647
0.632
VSX1
M00267_2.00
Homo sapiens
NNHAAYNNN
NNNRTTDNN
PBM
Barrera et al.(2016)
VSX1_Q175H
0.646
0.596
vsx2
M02079_2.00
Danio rerio
NNYTAATTARN
NYTAATTARNN
PBM
Weirauch et al.(2014)
pTH6221
0.646
0.579
PROP1
M00316_2.00
Homo sapiens
DTAATTRK
MYAATTAH
PBM
Barrera et al.(2016)
PROP1_R99Q
0.645
0.561
Mixl1
M10765_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MIXL1_03
0.643
0.596
ESX1
M00292_2.00
Homo sapiens
NNTAATNDN
NHNATTANN
PBM
Barrera et al.(2016)
ESX1_REF
0.641
0.614
ESX1
M03137_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ESX1_1
0.641
0.614
ESX1
M03138_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
ESX1_2
0.641
0.614
ESX1
M05087_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ESX1_eDBD_HT-SELEX
0.641
0.614
ESX1
M05089_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Yin et al.(2017)
ESX1_FL_HT-SELEX
0.641
0.614
ESX1
M05088_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
ESX1_eDBD_Methyl-HT-SELEX
0.641
0.614
ESX1
M05090_2.00
Homo sapiens
NTAATTRR
YYAATTAN
SELEX
Yin et al.(2017)
ESX1_FL_Methyl-HT-SELEX
0.641
0.614
Esx1
M00424_2.00
Mus musculus
NYTAATWR
YWATTARN
PBM
Berger et al.(2008)
Esx1_3124
0.640
0.596
CG9876
M03865_2.00
Drosophila melanogaster
SVTVATBRSN
NSYVATBABS
SELEX
Nitta et al.(2015)
CG9876_1
0.639
0.649
CG9876
M03866_2.00
Drosophila melanogaster
NTAATTRV
BYAATTAN
SELEX
Nitta et al.(2015)
CG9876_2
0.639
0.649
CG9876
M03867_2.00
Drosophila melanogaster
TAATYTAATTA
TAATTARATTA
SELEX
Nitta et al.(2015)
CG9876_3
0.639
0.649
CG9876
M03868_2.00
Drosophila melanogaster
TAATTRVNTAATTR
YAATTANBYAATTA
SELEX
Nitta et al.(2015)
CG9876_4
0.639
0.649
CG9876
M06537_2.00
Drosophila melanogaster
BTAATTR
YAATTAV
B1H
Mathelier et al.(2014)
MA0184.1
0.639
0.649
CG9876
M06350_2.00
Drosophila melanogaster
DBTAATTR
YAATTAVH
B1H
Zhu et al.(2011)
CG9876_Cell_FBgn0034821
0.639
0.649
CG9876
M06351_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
CG9876_SOLEXA_FBgn0034821
0.639
0.649
MIXL1
M03231_2.00
Homo sapiens
NNTAATTRNN
NNYAATTANN
SELEX
Jolma et al.(2013)
MIXL1_1
0.638
0.579
MIXL1
M05359_2.00
Homo sapiens
TAATBNVATTA
TAATBNVATTA
SELEX
Yin et al.(2017)
MIXL1_FL_HT-SELEX
0.638
0.579
MIXL1
M10747_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MIXL1_02
0.638
0.579
MIXL1
M05360_2.00
Homo sapiens
TAATYNRATTA
TAATYNRATTA
SELEX
Yin et al.(2017)
MIXL1_FL_Methyl-HT-SELEX_1
0.638
0.579
MIXL1
M05361_2.00
Homo sapiens
TAATYDCRTTA
TAAYGHRATTA
SELEX
Yin et al.(2017)
MIXL1_FL_Methyl-HT-SELEX_2
0.638
0.579
Otp
M00417_2.00
Mus musculus
NNHAATND
HNATTDNN
PBM
Berger et al.(2008)
Otp_3496
0.638
0.649
OdsH
M03851_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
OdsH_1
0.635
0.596
OdsH
M03852_2.00
Drosophila melanogaster
TAATBNVATTA
TAATBNVATTA
SELEX
Nitta et al.(2015)
OdsH_2
0.635
0.596
OdsH
M06528_2.00
Drosophila melanogaster
BTAATTR
YAATTAV
B1H
Mathelier et al.(2014)
MA0198.1
0.635
0.596
OdsH
M06330_2.00
Drosophila melanogaster
BTAATTR
YAATTAV
B1H
Zhu et al.(2011)
Odsh_Cell_FBgn0026058
0.635
0.596
OdsH
M06331_2.00
Drosophila melanogaster
NHTAATTR
YAATTADN
B1H
Zhu et al.(2011)
Odsh_SOLEXA_FBgn0026058
0.635
0.596
otp
M03834_2.00
Drosophila melanogaster
BTAATTRN
NYAATTAV
SELEX
Nitta et al.(2015)
otp_1
0.633
0.632
otp
M03835_2.00
Drosophila melanogaster
YTAATTRV
BYAATTAR
SELEX
Nitta et al.(2015)
otp_2
0.633
0.632
otp
M06516_2.00
Drosophila melanogaster
YTAATTA
TAATTAR
B1H
Mathelier et al.(2014)
MA0236.1
0.633
0.632
otp
M06309_2.00
Drosophila melanogaster
HYTAATTA
TAATTARD
B1H
Zhu et al.(2011)
Otp_Cell_FBgn0015524
0.633
0.632
otp
M06310_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Zhu et al.(2011)
Otp_SOLEXA_FBgn0015524
0.633
0.632
ISX
M00319_2.00
Homo sapiens
DTAATTRK
MYAATTAH
PBM
Barrera et al.(2016)
ISX_REF
0.633
0.667
ISX
M03218_2.00
Homo sapiens
NTAATTARATTAN
NTAATYTAATTAN
SELEX
Jolma et al.(2013)
ISX_1
0.633
0.667
ISX
M03219_2.00
Homo sapiens
NTAATTRV
BYAATTAN
SELEX
Jolma et al.(2013)
ISX_2
0.633
0.667
ISX
M03220_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
ISX_3
0.633
0.667
ISX
M05304_2.00
Homo sapiens
BTAATTRG
CYAATTAV
SELEX
Yin et al.(2017)
ISX_eDBD_HT-SELEX
0.633
0.667
ISX
M05307_2.00
Homo sapiens
YTAATTRS
SYAATTAR
SELEX
Yin et al.(2017)
ISX_FL_HT-SELEX
0.633
0.667
ISX
M05305_2.00
Homo sapiens
NTAATTAG
CTAATTAN
SELEX
Yin et al.(2017)
ISX_eDBD_Methyl-HT-SELEX_1
0.633
0.667
ISX
M05306_2.00
Homo sapiens
HTAAYGHN
NDCRTTAD
SELEX
Yin et al.(2017)
ISX_eDBD_Methyl-HT-SELEX_2
0.633
0.667
ISX
M05308_2.00
Homo sapiens
YTAATTRS
SYAATTAR
SELEX
Yin et al.(2017)
ISX_FL_Methyl-HT-SELEX_1
0.633
0.667
ISX
M05309_2.00
Homo sapiens
HTAAYGHN
NDCRTTAD
SELEX
Yin et al.(2017)
ISX_FL_Methyl-HT-SELEX_2
0.633
0.667
Isx
M00452_2.00
Mus musculus
NNHDATNN
NNATHDNN
PBM
Berger et al.(2008)
Isx_3445
0.633
0.614
RAX2
M03214_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
RAXL1_1
0.629
0.632
Q0N4F9_NEMVE
M02162_2.00
Nematostella vectensis
DTAATTAK
MTAATTAH
PBM
Weirauch et al.(2014)
pTH6150
0.628
0.491
Rax
M00426_2.00
Mus musculus
NNTAATTRN
NYAATTANN
PBM
Berger et al.(2008)
Rax_3443
0.627
0.614
RAX
M03149_2.00
Homo sapiens
NHTAATTRNN
NNYAATTADN
SELEX
Jolma et al.(2013)
RAX_1
0.627
0.614
Rx
M03840_2.00
Drosophila melanogaster
BTAATTRV
BYAATTAV
SELEX
Nitta et al.(2015)
Rx_1
0.627
0.614
Rx
M03841_2.00
Drosophila melanogaster
NTAATBNSATTAN
NTAATSNVATTAN
SELEX
Nitta et al.(2015)
Rx_2
0.627
0.614
RAX
M05142_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
RAX_eDBD_HT-SELEX
0.627
0.614
Rx
M06520_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Mathelier et al.(2014)
MA0202.1
0.627
0.614
Rx
M06317_2.00
Drosophila melanogaster
VYTAATTR
YAATTARB
B1H
Zhu et al.(2011)
Rx_Cell_FBgn0020617
0.627
0.614
Rx
M06318_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
Rx_SOLEXA_FBgn0020617
0.627
0.614
Rax
M10773_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RAX_04
0.627
0.614
RAX
M05143_2.00
Homo sapiens
NTAAYRNN
NNYRTTAN
SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_1
0.627
0.614
RAX
M05144_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_2
0.627
0.614
NEMVEDRAFT_v1g105595
M02143_2.00
Nematostella vectensis
NTWATWRN
NYWATWAN
PBM
Weirauch et al.(2014)
pTH5503
0.627
0.684
VSX1
M00268_2.00
Homo sapiens
NNWRAYNNN
NNNRTYWNN
PBM
Barrera et al.(2016)
VSX1_R166Q
0.625
0.596
Cdx2
M00447_2.00
Mus musculus
NWWAYDRNN
NNYHRTWWN
PBM
Berger et al.(2008)
Cdx2_4272
0.621
0.491
CDX2
M03196_2.00
Homo sapiens
KTTTATKRB
VYMATAAAM
SELEX
Jolma et al.(2013)
CDX2_1
0.621
0.491
CDX2
M05248_2.00
Homo sapiens
NDTWAYRRYN
NRYYRTWAHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1
0.621
0.491
CDX2
M05249_2.00
Homo sapiens
NDWWATKRB
VYMATWWHN
SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2
0.621
0.491
CDX2
M08131_2.00
Homo sapiens
YTTTATKRCHB
VDGYMATAAAR
ChIP-seq
Mathelier et al.(2014)
MA0465.1
0.621
0.491
CDX2
M09152_2.00
Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH
Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A
0.621
0.491
Cdx2
M09193_2.00
Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV
Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A
0.621
0.491
Cdx2
M09572_2.00
Mus musculus
NTTTTATKRC
GYMATAAAAN
Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586
0.621
0.491
CDX2
M10723_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_01
0.621
0.491
CDX2
M10724_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5_02
0.621
0.491
CDX2
M10725_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q5
0.621
0.491
CDX2
M10726_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX2_Q6
0.621
0.491
CDX2
M05250_2.00
Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN
SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX
0.621
0.491
Cdx1
M00427_2.00
Mus musculus
NWWATDRNN
NNYHATWWN
PBM
Berger et al.(2008)
Cdx1_2245
0.621
0.474
Q70LF3_ARTSF
M02211_2.00
Artemia franciscana
BTAATTAB
VTAATTAV
PBM
Weirauch et al.(2014)
pTH5553
0.621
0.474
CDX1
M03115_2.00
Homo sapiens
NTTTATKRB
VYMATAAAN
SELEX
Jolma et al.(2013)
CDX1_1
0.621
0.474
CDX1
M05018_2.00
Homo sapiens
VKTTTATKRCN
NGYMATAAAMB
SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX
0.621
0.474
CDX4
M05129_2.00
Homo sapiens
VKTTTATKRCH
DGYMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX
0.621
0.474
CDX1
M09140_2.00
Homo sapiens
HCWTAAAD
HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C
0.621
0.474
Cdx1
M09186_2.00
Mus musculus
HCWTAAAD
HTTTAWGD
Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C
0.621
0.474
Cdx4
M09197_2.00
Mus musculus
WGATTTATDRBH
DVYHATAAATCW
Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A
0.621
0.474
CDX1
M10670_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q4
0.621
0.474
CDX1
M10671_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDX1_Q5
0.621
0.474
CDX1
M10761_2.00
Gallus gallus
BDBWAAK
MTTWVHV
Transfac
Matys et al.(2006)
V$CDXA_01
0.621
0.474
CDX1
M10762_2.00
Gallus gallus
WWWWMYR
YRKWAWW
Transfac
Matys et al.(2006)
V$CDXA_02
0.621
0.474
CDX1
M05019_2.00
Homo sapiens
NGTCGTAAAWB
VWTTTACGACN
SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX
0.621
0.474
CDX4
M05130_2.00
Homo sapiens
BGTCGTAAAHN
NDTTTACGACV
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1
0.621
0.474
CDX4
M05131_2.00
Homo sapiens
VKTTTATKGCN
NGCMATAAAMB
SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2
0.621
0.474
Vsx2
M02130_2.00
Drosophila melanogaster
TTAATTAB
VTAATTAA
PBM
Weirauch et al.(2014)
pTH6195
0.618
0.561
Vsx2
M03880_2.00
Drosophila melanogaster
NTAATTRN
NYAATTAN
SELEX
Nitta et al.(2015)
Vsx2_1
0.618
0.561
Vsx2
M03881_2.00
Drosophila melanogaster
HRAYNVNNTRATKD
HMATYANNBNRTYD
SELEX
Nitta et al.(2015)
Vsx2_2
0.618
0.561
Vsx2
M06553_2.00
Drosophila melanogaster
KTTAATTAG
CTAATTAAM
B1H
Mathelier et al.(2014)
MA0180.1
0.618
0.561
Vsx2
M06382_2.00
Drosophila melanogaster
KTTAATTAG
CTAATTAAM
B1H
Zhu et al.(2011)
CG33980_Cell_FBgn0053980
0.618
0.561
Vsx2
M06383_2.00
Drosophila melanogaster
NNTAATTRRN
NYYAATTANN
B1H
Zhu et al.(2011)
CG33980_SOLEXA_2_0_FBgn0053980
0.618
0.561
Vsx2
M06384_2.00
Drosophila melanogaster
NNTAATKDN
NHMATTANN
B1H
Zhu et al.(2011)
CG33980_SOLEXA_2_10_FBgn0053980
0.618
0.561
Vsx2
M06385_2.00
Drosophila melanogaster
NHTAATTR
YAATTADN
B1H
Zhu et al.(2011)
CG33980_SOLEXA_FBgn0053980
0.618
0.561
PHOX2B
M00279_2.00
Homo sapiens
NVTAATTRMNN
NNKYAATTABN
PBM
Barrera et al.(2016)
PHOX2B_R100L
0.617
0.649
PHOX2B
M00278_2.00
Homo sapiens
NNNNNRY
RYNNNNN
PBM
Barrera et al.(2016)
PHOX2B_Q143R
0.616
0.649
cad
M03780_2.00
Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN
SELEX
Nitta et al.(2015)
cad_1
0.613
0.439
cad
M03781_2.00
Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_2
0.613
0.439
cad
M03782_2.00
Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN
SELEX
Nitta et al.(2015)
cad_3
0.613
0.439
cad
M03783_2.00
Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN
SELEX
Nitta et al.(2015)
cad_4
0.613
0.439
cad
M06223_2.00
Drosophila melanogaster
HTTWATTR
YAATWAAD
B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251
0.613
0.439
cad
M06224_2.00
Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY
B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251
0.613
0.439
cad
M06225_2.00
Drosophila melanogaster
NTTWATKR
YMATWAAN
B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251
0.613
0.439
cad
M08420_2.00
Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH
ChIP-chip
Mathelier et al.(2014)
MA0216.2
0.613
0.439
cad
M09580_2.00
Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH
Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode
0.613
0.439
cad
M09674_2.00
Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD
Misc
Kulakovskiy et al.(2009)
cad
0.613
0.439
cad
M10783_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$CAD_Q6
0.613
0.439
Hoxa13
M00473_2.00
Mus musculus
NTTWAYDRN
NYHRTWAAN
PBM
Berger et al.(2008)
Hoxa13_3126
0.606
0.439
HOXA13
M03098_2.00
Homo sapiens
DKTTTATKRS
SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_1
0.606
0.439
HOXA13
M03099_2.00
Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_2
0.606
0.439
HOXA13
M03100_2.00
Homo sapiens
DKTTTATKRS
SYMATAAAMH
SELEX
Jolma et al.(2013)
HOXA13_3
0.606
0.439
HOXA13
M03101_2.00
Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXA13_4
0.606
0.439
HOXA13
M04977_2.00
Homo sapiens
DTTTTATKGGB
VCCMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1
0.606
0.439
HOXA13
M04978_2.00
Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2
0.606
0.439
HOXA13
M04981_2.00
Homo sapiens
DTTTTATKRSN
NSYMATAAAAH
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1
0.606
0.439
HOXA13
M04982_2.00
Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2
0.606
0.439
HOXA13
M09134_2.00
Homo sapiens
VDTWTWATKGS
SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C
0.606
0.439
Hoxa13
M09202_2.00
Mus musculus
VDTWTWATKGS
SCMATWAWAHB
Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C
0.606
0.439
HOXA13
M10653_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_01
0.606
0.439
HOXA13
M10654_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXA13_02
0.606
0.439
HOXA13
M04979_2.00
Homo sapiens
DTTTTATTRSN
NSYAATAAAAH
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1
0.606
0.439
HOXA13
M04980_2.00
Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2
0.606
0.439
HOXA13
M04983_2.00
Homo sapiens
DKTTTATTGBN
NVCAATAAAMH
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1
0.606
0.439
HOXA13
M04984_2.00
Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN
SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2
0.606
0.439
HOXD13
M00299_2.00
Homo sapiens
NTTWAYDDN
NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_REF
0.606
0.421
Hoxc13
M00389_2.00
Mus musculus
NTTWAYDRNN
NNYHRTWAAN
PBM
Berger et al.(2008)
Hoxc13_3127
0.606
0.421
Hoxd13
M00394_2.00
Mus musculus
NWTHRYDDN
NHHRYDAWN
PBM
Berger et al.(2008)
Hoxd13_2356
0.606
0.421
HOXC13
M03129_2.00
Homo sapiens
NTTTTATTRS
SYAATAAAAN
SELEX
Jolma et al.(2013)
HOXC13_1
0.606
0.421
HOXC13
M03130_2.00
Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN
SELEX
Jolma et al.(2013)
HOXC13_2
0.606
0.421
HOXD13
M03141_2.00
Homo sapiens
DTTTTATKRS
SYMATAAAAH
SELEX
Jolma et al.(2013)
HOXD13_1
0.606
0.421
HOXD13
M03142_2.00
Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV
SELEX
Jolma et al.(2013)
HOXD13_2
0.606
0.421
Hoxd13
M03247_2.00
Mus musculus
DKTTTATTRS
SYAATAAAMH
SELEX
Jolma et al.(2013)
Hoxd13_1
0.606
0.421
Hoxd13
M03248_2.00
Mus musculus
DDTTTAYKAGN
NCTMRTAAAHH
SELEX
Jolma et al.(2013)
Hoxd13_2
0.606
0.421
HOXC13
M05072_2.00
Homo sapiens
RKTTTATKGSN
NSCMATAAAMY
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1
0.606
0.421
HOXC13
M05073_2.00
Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2
0.606
0.421
HOXD13
M05122_2.00
Homo sapiens
GKTTTATKGSS
SSCMATAAAMC
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1
0.606
0.421
HOXD13
M05123_2.00
Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV
SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2
0.606
0.421
HOXC13
M10680_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXC13_Q2
0.606
0.421
HOXD13
M10689_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HOXD13_Q6
0.606
0.421
HOXD13
M00293_2.00
Homo sapiens
NTTWAYDDNN
NNHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_I297V
0.606
0.421
HOXD13
M00294_2.00
Homo sapiens
THGTWAAW
WTTWACDA
PBM
Barrera et al.(2016)
HOXD13_I322L
0.606
0.421
HOXD13
M00295_2.00
Homo sapiens
NTTWAYDDN
NHHRTWAAN
PBM
Barrera et al.(2016)
HOXD13_N298S
0.606
0.421
HOXC13
M05074_2.00
Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV
SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX
0.606
0.421
HOXD13
M05124_2.00
Homo sapiens
DDTTTATTRBB
VVYAATAAAHH
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1
0.606
0.421
HOXD13
M05125_2.00
Homo sapiens
VCTCGTAAAAH
DTTTTACGAGB
SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2
0.606
0.421
HOXD13
M00300_2.00
Homo sapiens
WTTTATDR
YHATAAAW
PBM
Barrera et al.(2016)
HOXD13_S316C
0.606
0.404
hoxd13a
M02081_2.00
Danio rerio
WTTTATDR
YHATAAAW
PBM
Weirauch et al.(2014)
pTH6143
0.604
0.421
Vsx1
M02129_2.00
Drosophila melanogaster
VTTAATTRR
YYAATTAAB
PBM
Weirauch et al.(2014)
pTH5821
0.604
0.561
Vsx1
M03879_2.00
Drosophila melanogaster
NTAATTRV
BYAATTAN
SELEX
Nitta et al.(2015)
Vsx1_1
0.604
0.561
Vsx1
M06552_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Mathelier et al.(2014)
MA0181.1
0.604
0.561
Vsx1
M06380_2.00
Drosophila melanogaster
YTAATTR
YAATTAR
B1H
Zhu et al.(2011)
CG4136_Cell_FBgn0029775
0.604
0.561
Vsx1
M06381_2.00
Drosophila melanogaster
HTAATTR
YAATTAD
B1H
Zhu et al.(2011)
CG4136_SOLEXA_FBgn0029775
0.604
0.561
mixl1.S
M02233_2.00
Xenopus laevis
NHTAATTAANN
NNTTAATTADN
PBM
Weirauch et al.(2014)
pTH6163
0.602
0.544
ISX
M00318_2.00
Homo sapiens
DTAATTRK
MYAATTAH
PBM
Barrera et al.(2016)
ISX_R83Q
0.601
0.649
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15038487
Homeodomain
16
72
RRHRVNFTVHQLMELERIFDQTHYPDAHIREELSARLHLSEARVQVWFQNRRAKSRK
Links
Other
Homeodomain
family TFs
Other
Schmidtea mediterranea
TFs
2489 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy