SNAPOd2T00002150001 (Oikopleura dioica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SNAPOd2T00002150001 T230328_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hnf1b
M00408_2.00 		Mus musculus
NNHWCNNN
NNNGWDNN		 PBM
Berger et al.(2008)
Tcf2_0913 		0.843 0.836
HNF1A
M03150_2.00 		Homo sapiens
NGTTAATNATTAAYN
NRTTAATNATTAACN		 SELEX
Jolma et al.(2013)
HNF1A_1 		0.843 0.836
HNF1B
M03245_2.00 		Homo sapiens
GTTAATNATTAAY
RTTAATNATTAAC		 SELEX
Jolma et al.(2013)
HNF1B_1 		0.843 0.836
HNF1B
M03246_2.00 		Homo sapiens
NGTTAATNATTAAYN
NRTTAATNATTAACN		 SELEX
Jolma et al.(2013)
HNF1B_2 		0.843 0.836
HNF1A
M09144_2.00 		Homo sapiens
DGTTAATKATTAACH
DGTTAATMATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C 		0.843 0.836
HNF1B
M09168_2.00 		Homo sapiens
DGTTAATRATTAACH
DGTTAATYATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A 		0.843 0.836
Hnf1b
M09179_2.00 		Mus musculus
DGTTAATRATTAACH
DGTTAATYATTAACH		 Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A 		0.843 0.836
HNF1A
M10690_2.00 		Homo sapiens
RGTTAATDWTTRMHV
BDKYAAWHATTAACY		 Transfac
Matys et al.(2006)
V$HNF1_01 		0.843 0.836
HNF1A
M10691_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1A_Q4 		0.843 0.836
HNF1A
M10692_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1A_Q5 		0.843 0.836
HNF1B
M10758_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1B_Q6_01 		0.843 0.836
HNF1B
M10759_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF1B_Q6 		0.843 0.836
HNF1A
M10693_2.00 		Homo sapiens
DGBTAATBAWTHAMYWM
KWRKTDAWTVATTAVCH		 Transfac
Matys et al.(2006)
V$HNF1_C 		0.843 0.836
HNF1B
M10760_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LFA1_Q6 		0.843 0.836
Hnf1a
M00171_2.00 		Mus musculus
HTAAYYNN
NNRRTTAD		 PBM
Badis et al.(2009)
Tcf1_2666 		0.837 0.818
Hnf1a
M00444_2.00 		Mus musculus
HTAAYYNNN
NNNRRTTAD		 PBM
Berger et al.(2008)
Tcf1_2666 		0.837 0.818
Hnf1a
M09191_2.00 		Mus musculus
RGTTAATNWTTDMHN
NDKHAAWNATTAACY		 Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A 		0.837 0.818
Hmbox1
M00419_2.00 		Mus musculus
NNNGWNNN
NNNWCNNN		 PBM
Berger et al.(2008)
Hmbox1_2674 		0.646 0.418
HMBOX1
M03167_2.00 		Homo sapiens
BKTAACTARB
VYTAGTTAMV		 SELEX
Jolma et al.(2013)
HMBOX1_1 		0.646 0.418
HMBOX1
M05180_2.00 		Homo sapiens
BTAACYAGB
VCTRGTTAV		 SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX 		0.646 0.418
HMBOX1
M05181_2.00 		Homo sapiens
NTAACTAGB
VCTAGTTAN		 SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX 		0.646 0.418
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00002150001 Homeodomain 179 254

Links

Other Homeodomain family TFs
Other Oikopleura dioica TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HNF1B Procavia capensis ENSPCAG00000008147 I 0.843
ENSPFOG00000009496 Poecilia formosa ENSPFOG00000009496 I 0.843
ENSPPYG00000008222 Pongo abelii ENSPPYG00000008222 I 0.843
ENSPANG00000022102 Papio anubis ENSPANG00000022102 I 0.843
ENSPANG00000008728 Papio anubis ENSPANG00000008728 I 0.843
HNF1A Ochotona princeps ENSOPRG00000001671 I 0.843
HNF1B Ochotona princeps ENSOPRG00000003933 I 0.843
hnf1ba Oryzias latipes ENSORLG00000004564 I 0.843
ENSPSIG00000009511 Pelodiscus sinensis ENSPSIG00000009511 I 0.843
ENSPSIG00000013055 Pelodiscus sinensis ENSPSIG00000013055 I 0.843
Hnf1a Rattus norvegicus ENSRNOG00000001183 I 0.843
Hnf1b Rattus norvegicus ENSRNOG00000002598 I 0.843
HNF1B Sorex araneus ENSSARG00000007152 I 0.843
HNF1B Pteropus vampyrus ENSPVAG00000010466 I 0.843
HNF1A Pteropus vampyrus ENSPVAG00000008044 I 0.843
HNF1A Pan troglodytes ENSPTRG00000005551 I 0.843
HNF1B Pan troglodytes ENSPTRG00000009059 I 0.843
ENSONIG00000013161 Oreochromis niloticus ENSONIG00000013161 I 0.843
HNF1A Otolemur garnettii ENSOGAG00000009071 I 0.843
HNF1B Myotis lucifugus ENSMLUG00000012260 I 0.843
HNF1B Macaca mulatta ENSMMUG00000003431 I 0.843
HNF1A Monodelphis domestica ENSMODG00000002966 I 0.843
HNF1A Myotis lucifugus ENSMLUG00000009109 I 0.843
HNF1A Meleagris gallopavo ENSMGAG00000008538 I 0.843
ENSLOCG00000005942 Lepisosteus oculatus ENSLOCG00000005942 I 0.843
ENSMEUG00000004163 Macropus eugenii ENSMEUG00000004163 I 0.843
HNF1B Meleagris gallopavo ENSMGAG00000008126 I 0.843
HNF1B Monodelphis domestica ENSMODG00000019108 I 0.843
ENSMPUG00000003290 Mustela putorius furo ENSMPUG00000003290 I 0.843
ENSOARG00000003338 Ovis aries ENSOARG00000003338 I 0.843
ENSOARG00000013764 Ovis aries ENSOARG00000013764 I 0.843
HNF1B Otolemur garnettii ENSOGAG00000000869 I 0.843
HNF1A Ornithorhynchus anatinus ENSOANG00000014646 I 0.843
ENSNLEG00000002919 Nomascus leucogenys ENSNLEG00000002919 I 0.843
ENSMPUG00000015004 Mustela putorius furo ENSMPUG00000015004 I 0.843
Hnf1b Mus musculus ENSMUSG00000020679 D 0.843
ENSSHAG00000005052 Sarcophilus harrisii ENSSHAG00000005052 I 0.843
HNF1A Sus scrofa ENSSSCG00000009919 I 0.843
Myotis_brandtii_HNF1A_10028127 Myotis brandtii Myotis_brandtii_HNF1A_10028127 I 0.843
Myotis_brandtii_HNF1B_10031016 Myotis brandtii Myotis_brandtii_HNF1B_10031016 I 0.843
Ogr03456 Ophisaurus gracilis Ogr03456 I 0.843
Gfo_R012758 Geospiza fortis Gfo_R012758 I 0.843
Gfo_R010877 Geospiza fortis Gfo_R010877 I 0.843
ENSBTAP00000029049-D1 Bos grunniens ENSBTAP00000029049-D1 I 0.843
ENSP00000225893 Macaca fascicularis ENSP00000225893 I 0.843
ENSP00000257555 Macaca fascicularis ENSP00000257555 I 0.843
Pvit_03697 Pogona vitticeps Pvit_03697 I 0.843
Pvit_13545 Pogona vitticeps Pvit_13545 I 0.843
hnf1b.L Xenopus laevis XB-GENE-485656 I 0.843
hnf1a.S Xenopus laevis XB-GENE-865049 I 0.843
XP_002939680 Xenopus tropicalis XP_002939680 I 0.843
hnf1b Xenopus tropicalis XB-GENE-485652 I 0.843
hnf1a Xenopus tropicalis XB-GENE-484117 I 0.843
Tal_R010417 Tyto alba Tal_R010417 I 0.843
hnf1b.S Xenopus laevis XB-GENE-17330995 I 0.843
ENSBTAP00000006184-D1 Bos grunniens ENSBTAP00000006184-D1 I 0.843
Cmyd_10016186 Chelonia mydas Cmyd_10016186 I 0.843
hnf1ba Takifugu rubripes ENSTRUG00000003809 I 0.843
ENSTSYG00000010701 Tarsius syrichta ENSTSYG00000010701 I 0.843
HNF1B Tursiops truncatus ENSTTRG00000015910 I 0.843
hnf1ba Tetraodon nigroviridis ENSTNIG00000016225 I 0.843
HNF1A Taeniopygia guttata ENSTGUG00000009673 I 0.843
HNF1B Sus scrofa ENSSSCG00000022417 I 0.843
ENSSTOG00000004719 Ictidomys tridecemlineatus ENSSTOG00000004719 I 0.843
ENSSTOG00000012440 Ictidomys tridecemlineatus ENSSTOG00000012440 I 0.843
ENSXMAG00000011775 Xiphophorus maculatus ENSXMAG00000011775 I 0.843
Aan_R008292 Calypte anna Aan_R008292 I 0.843
Alligator_sinensis_CCG014136.1 Alligator sinensis Alligator_sinensis_CCG014136.1 I 0.843
Brh_R011090 Buceros rhinoceros Brh_R011090 I 0.843
Cmyd_10005161 Chelonia mydas Cmyd_10005161 I 0.843
Alligator_sinensis_CCG002074.1 Alligator sinensis Alligator_sinensis_CCG002074.1 I 0.843
Afo_R013605 Aptenodytes forsteri Afo_R013605 I 0.843
Aan_R014136 Calypte anna Aan_R014136 I 0.843
Afo_R009049 Aptenodytes forsteri Afo_R009049 I 0.843
ENSLOCG00000002874 Lepisosteus oculatus ENSLOCG00000002874 I 0.843
HNF1B Oryctolagus cuniculus ENSOCUG00000003682 I 0.843
Hnf1a Dipodomys ordii ENSDORG00000007676 I 0.843
Hnf1b Dipodomys ordii ENSDORG00000009669 I 0.843
HNF1B Equus caballus ENSECAG00000015854 I 0.843
HNF1A Dasypus novemcinctus ENSDNOG00000000374 I 0.843
hnf1bb Danio rerio ENSDARG00000022295 I 0.843
ENSCSAG00000006125 Chlorocebus sabaeus ENSCSAG00000006125 I 0.843
hnf1ba Danio rerio ENSDARG00000006615 I 0.843
HNF1A Equus caballus ENSECAG00000019954 I 0.843
HNF1B Erinaceus europaeus ENSEEUG00000004998 I 0.843
HNF1A Homo sapiens ENSG00000135100 D 0.843
HNF1B Homo sapiens ENSG00000275410 D 0.843
HNF1A Felis catus ENSFCAG00000009638 I 0.843
HNF1B Felis catus ENSFCAG00000000241 I 0.843
ENSFALG00000005101 Ficedula albicollis ENSFALG00000005101 I 0.843
ENSFALG00000007499 Ficedula albicollis ENSFALG00000007499 I 0.843
ENSCSAG00000002227 Chlorocebus sabaeus ENSCSAG00000002227 I 0.843
HNF1A Cavia porcellus ENSCPOG00000007242 I 0.843
ENSAMXG00000005661 Astyanax mexicanus ENSAMXG00000005661 I 0.843
ENSAMXG00000024376 Astyanax mexicanus ENSAMXG00000024376 I 0.843
ENSAMXG00000004039 Astyanax mexicanus ENSAMXG00000004039 I 0.843
ENSAMEG00000013125 Ailuropoda melanoleuca ENSAMEG00000013125 I 0.843
HNF1B Anolis carolinensis ENSACAG00000006458 I 0.843
ENSAMEG00000008387 Ailuropoda melanoleuca ENSAMEG00000008387 I 0.843
ENSAPLG00000002580 Anas platyrhynchos ENSAPLG00000002580 I 0.843
HNF1B Bos taurus ENSBTAG00000004710 I 0.843
HNF1B Callithrix jacchus ENSCJAG00000015174 I 0.843
HNF1B Cavia porcellus ENSCPOG00000001234 I 0.843
HNF1B Choloepus hoffmanni ENSCHOG00000006010 I 0.843
HNF1B Canis familiaris ENSCAFG00000018150 I 0.843
HNF1A Bos taurus ENSBTAG00000021795 I 0.843
HNF1A Canis familiaris ENSCAFG00000010502 I 0.843
hnf1ba Gasterosteus aculeatus ENSGACG00000011101 I 0.843
HNF1B Dasypus novemcinctus ENSDNOG00000001586 I 0.843
ENSGMOG00000001038 Gadus morhua ENSGMOG00000001038 I 0.843
ENSGMOG00000016065 Gadus morhua ENSGMOG00000016065 I 0.843
HNF1B Gorilla gorilla ENSGGOG00000006322 I 0.843
HNF1A Gorilla gorilla ENSGGOG00000004329 I 0.843
HNF1A Gallus gallus ENSGALG00000006968 I 0.843
HNF1B Gallus gallus ENSGALG00000005504 I 0.843
ENSLACG00000012983 Latimeria chalumnae ENSLACG00000012983 I 0.843
HNF1B Loxodonta africana ENSLAFG00000002573 I 0.843
HNF1A Loxodonta africana ENSLAFG00000017872 I 0.843
ENSLACG00000017915 Latimeria chalumnae ENSLACG00000017915 I 0.843
fgenesh2_kg.scaffold_214000001 Branchiostoma floridae fgenesh2_kg.scaffold_214000001 I 0.840
fgenesh2_kg.scaffold_157000001 Branchiostoma floridae fgenesh2_kg.scaffold_157000001 I 0.840
Hnf1a Mus musculus ENSMUSG00000029556 D 0.837
Sakowv30011728m.g Saccoglossus kowalevskii Sakowv30011728m.g I 0.834
SPU_010305 Strongylocentrotus purpuratus SPU_010305 I 0.824
ENSCING00000007645 Ciona intestinalis ENSCING00000007645 I 0.808
ENSCSAVG00000009827 Ciona savignyi ENSCSAVG00000009827 I 0.806
hnf1a Takifugu rubripes ENSTRUG00000016222 I 0.798
ENSXMAG00000003472 Xiphophorus maculatus ENSXMAG00000003472 I 0.798
hnf1a Danio rerio ENSDARG00000009470 I 0.798
ENSONIG00000011178 Oreochromis niloticus ENSONIG00000011178 I 0.798
ENSPFOG00000013053 Poecilia formosa ENSPFOG00000013053 I 0.798
hnf1a Tetraodon nigroviridis ENSTNIG00000011468 I 0.798
hnf1a Gasterosteus aculeatus ENSGACG00000012691 I 0.787
ENSORLG00000018971 Oryzias latipes ENSORLG00000018971 I 0.782
TriadG28952 Trichoplax adhaerens TriadG28952 I 0.751
zgc:91944 Takifugu rubripes ENSTRUG00000012550 I 0.691
zgc:91944 Gasterosteus aculeatus ENSGACG00000009223 I 0.691
zgc:91944 Tetraodon nigroviridis ENSTNIG00000014025 I 0.691
ENSONIG00000007704 Oreochromis niloticus ENSONIG00000007704 I 0.691
ENSAMXG00000011241 Astyanax mexicanus ENSAMXG00000011241 I 0.691
zgc:91944 Oryzias latipes ENSORLG00000020883 I 0.691
ENSGMOG00000004622 Gadus morhua ENSGMOG00000004622 I 0.691
zgc:91944 Danio rerio ENSDARG00000035887 I 0.691
ENSPFOG00000012263 Poecilia formosa ENSPFOG00000012263 I 0.691
ENSXMAG00000005730 Xiphophorus maculatus ENSXMAG00000005730 I 0.691
SPU_022737 Strongylocentrotus purpuratus SPU_022737 I 0.685
SPU_002791 Strongylocentrotus purpuratus SPU_002791 I 0.685
ENSP00000401769-D1 Bos grunniens ENSP00000401769-D1 I 0.646
ENSLACG00000011304 Latimeria chalumnae ENSLACG00000011304 I 0.646
ENSP00000401769 Macaca fascicularis ENSP00000401769 I 0.646
Gfo_R008926 Geospiza fortis Gfo_R008926 I 0.646
HMBOX1 Myotis lucifugus ENSMLUG00000007478 I 0.646
HMBOX1 Bos taurus ENSBTAG00000010819 I 0.646
HMBOX1 Canis familiaris ENSCAFG00000008237 I 0.646
ENSPSIG00000016826 Pelodiscus sinensis ENSPSIG00000016826 I 0.646
Brh_R012838 Buceros rhinoceros Brh_R012838 I 0.646
ENSPFOG00000000843 Poecilia formosa ENSPFOG00000000843 I 0.646
HMBOX1 Macaca mulatta ENSMMUG00000014981 I 0.646
Cmyd_10005786 Chelonia mydas Cmyd_10005786 I 0.646
ENSGMOG00000006872 Gadus morhua ENSGMOG00000006872 I 0.646
HMBOX1 Choloepus hoffmanni ENSCHOG00000005538 I 0.646
Myotis_brandtii_HMBOX1_10012332 Myotis brandtii Myotis_brandtii_HMBOX1_10012332 I 0.646
ENSAPLG00000006003 Anas platyrhynchos ENSAPLG00000006003 I 0.646
ENSLOCG00000015994 Lepisosteus oculatus ENSLOCG00000015994 I 0.646
ENSAMEG00000016028 Ailuropoda melanoleuca ENSAMEG00000016028 I 0.646
ENSFALG00000010859 Ficedula albicollis ENSFALG00000010859 I 0.646
hmbox1.S Xenopus laevis XB-GENE-6078482 I 0.646
HMBOX1 Loxodonta africana ENSLAFG00000032318 I 0.646
HMBOX1 Anolis carolinensis ENSACAG00000010160 I 0.646
ENSPPYG00000018480 Pongo abelii ENSPPYG00000018480 I 0.646
ENSOARG00000015036 Ovis aries ENSOARG00000015036 I 0.646
HMBOX1 Homo sapiens ENSG00000147421 D 0.646
hmbox1b Oryzias latipes ENSORLG00000016242 I 0.646
ENSAMXG00000018539 Astyanax mexicanus ENSAMXG00000018539 I 0.646
ENSMEUG00000015023 Macropus eugenii ENSMEUG00000015023 I 0.646
hmbox1b Gasterosteus aculeatus ENSGACG00000004391 I 0.646
HMBOX1 Otolemur garnettii ENSOGAG00000001381 I 0.646
hmbox1a Danio rerio ENSDARG00000027082 I 0.646
HMBOX1 Gallus gallus ENSGALG00000016633 I 0.646
HMBOX1 Dasypus novemcinctus ENSDNOG00000031840 I 0.646
ENSLOCG00000001916 Lepisosteus oculatus ENSLOCG00000001916 I 0.646
ENSTSYG00000001109 Tarsius syrichta ENSTSYG00000001109 I 0.646
ENSONIG00000001328 Oreochromis niloticus ENSONIG00000001328 I 0.646
ENSCSAG00000015894 Chlorocebus sabaeus ENSCSAG00000015894 I 0.646
HMBOX1 Tursiops truncatus ENSTTRG00000015467 I 0.646
hmbox1b Takifugu rubripes ENSTRUG00000004378 I 0.646
HMBOX1 Felis catus ENSFCAG00000022672 I 0.646
hmbox1b Danio rerio ENSDARG00000018913 I 0.646
HMBOX1 Oryctolagus cuniculus ENSOCUG00000017211 I 0.646
HMBOX1 Taeniopygia guttata ENSTGUG00000013324 I 0.646
Hmbox1 Mus musculus ENSMUSG00000021972 D 0.646
ENSSHAG00000016211 Sarcophilus harrisii ENSSHAG00000016211 I 0.646
HMBOX1 Sus scrofa ENSSSCG00000009682 I 0.646
HMBOX1 Callithrix jacchus ENSCJAG00000015654 I 0.646
ENSXMAG00000001795 Xiphophorus maculatus ENSXMAG00000001795 I 0.646
Aan_R010756 Calypte anna Aan_R010756 I 0.646
ENSMPUG00000001070 Mustela putorius furo ENSMPUG00000001070 I 0.646
HMBOX1 Cavia porcellus ENSCPOG00000011124 I 0.646
ENSGMOG00000002742 Gadus morhua ENSGMOG00000002742 I 0.646
HMBOX1 Monodelphis domestica ENSMODG00000008788 I 0.646
Afo_R011837 Aptenodytes forsteri Afo_R011837 I 0.646
HMBOX1 Pan troglodytes ENSPTRG00000020127 I 0.646
ENSNLEG00000016701 Nomascus leucogenys ENSNLEG00000016701 I 0.646
HMBOX1 Procavia capensis ENSPCAG00000012005 I 0.646
Hmbox1 Rattus norvegicus ENSRNOG00000013326 I 0.646
HMBOX1 Gorilla gorilla ENSGGOG00000000860 I 0.646
HMBOX1 Equus caballus ENSECAG00000008240 I 0.646
ENSPANG00000014537 Papio anubis ENSPANG00000014537 I 0.646
HelroG166133 Helobdella robusta HelroG166133 I 0.639
CapteG124171 Capitella teleta CapteG124171 I 0.639