hnf1b (Xenopus tropicalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XB-GENE-485652 T230495_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HNF1A
M03150_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1A_1
0.865 0.945
HNF1A
M09144_2.00
Homo sapiens
DGTTAATKATTAACH

DGTTAATMATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1A_HUMAN.H11MO.0.C
0.865 0.945
HNF1A
M10690_2.00
Homo sapiens
RGTTAATDWTTRMHV

BDKYAAWHATTAACY
Transfac
Matys et al.(2006)
V$HNF1_01
0.865 0.945
HNF1A
M10691_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q4
0.865 0.945
HNF1A
M10692_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1A_Q5
0.865 0.945
HNF1A
M10693_2.00
Homo sapiens
DGBTAATBAWTHAMYWM

KWRKTDAWTVATTAVCH
Transfac
Matys et al.(2006)
V$HNF1_C
0.865 0.945
Hnf1b
M00408_2.00
Mus musculus
NNHWCNNN

NNNGWDNN
PBM
Berger et al.(2008)
Tcf2_0913
0.864 0.964
HNF1B
M03245_2.00
Homo sapiens
GTTAATNATTAAY

RTTAATNATTAAC
SELEX
Jolma et al.(2013)
HNF1B_1
0.864 0.964
HNF1B
M03246_2.00
Homo sapiens
NGTTAATNATTAAYN

NRTTAATNATTAACN
SELEX
Jolma et al.(2013)
HNF1B_2
0.864 0.964
HNF1B
M09168_2.00
Homo sapiens
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_HUMAN.H11MO.0.A
0.864 0.964
Hnf1b
M09179_2.00
Mus musculus
DGTTAATRATTAACH

DGTTAATYATTAACH
Misc
Kulakovskiy et al.(2013)
HNF1B_MOUSE.H11MO.0.A
0.864 0.964
HNF1B
M10758_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6_01
0.864 0.964
HNF1B
M10759_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF1B_Q6
0.864 0.964
HNF1B
M10760_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LFA1_Q6
0.864 0.964
Hnf1a
M00171_2.00
Mus musculus
HTAAYYNN

NNRRTTAD
PBM
Badis et al.(2009)
Tcf1_2666
0.859 0.927
Hnf1a
M00444_2.00
Mus musculus
HTAAYYNNN

NNNRRTTAD
PBM
Berger et al.(2008)
Tcf1_2666
0.859 0.927
Hnf1a
M09191_2.00
Mus musculus
RGTTAATNWTTDMHN

NDKHAAWNATTAACY
Misc
Kulakovskiy et al.(2013)
HNF1A_MOUSE.H11MO.0.A
0.859 0.927
Hmbox1
M00419_2.00
Mus musculus
NNNGWNNN

NNNWCNNN
PBM
Berger et al.(2008)
Hmbox1_2674
0.638 0.382
HMBOX1
M03167_2.00
Homo sapiens
BKTAACTARB

VYTAGTTAMV
SELEX
Jolma et al.(2013)
HMBOX1_1
0.638 0.382
HMBOX1
M05180_2.00
Homo sapiens
BTAACYAGB

VCTRGTTAV
SELEX
Yin et al.(2017)
HMBOX1_eDBD_HT-SELEX
0.638 0.382
HMBOX1
M05181_2.00
Homo sapiens
NTAACTAGB

VCTAGTTAN
SELEX
Yin et al.(2017)
HMBOX1_eDBD_Methyl-HT-SELEX
0.638 0.382
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002939679 Homeodomain 231 306

Links

Other Homeodomain family TFs
Other Xenopus tropicalis TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000008387 Ailuropoda melanoleuca ENSAMEG00000008387 I 0.865
ENSAMEG00000013125 Ailuropoda melanoleuca ENSAMEG00000013125 I 0.864
ENSAMEG00000016028 Ailuropoda melanoleuca ENSAMEG00000016028 I 0.638
Alligator_sinensis_CCG014136.1 Alligator sinensis Alligator_sinensis_CCG014136.1 I 0.865
Alligator_sinensis_CCG002074.1 Alligator sinensis Alligator_sinensis_CCG002074.1 I 0.864
ENSAPLG00000006003 Anas platyrhynchos ENSAPLG00000006003 I 0.638
ENSAPLG00000002580 Anas platyrhynchos ENSAPLG00000002580 I 0.865
HMBOX1 Anolis carolinensis ENSACAG00000010160 I 0.638
HNF1B Anolis carolinensis ENSACAG00000006458 I 0.864
Afo_R013605 Aptenodytes forsteri Afo_R013605 I 0.864
Afo_R011837 Aptenodytes forsteri Afo_R011837 I 0.638
Afo_R009049 Aptenodytes forsteri Afo_R009049 I 0.865
ENSAMXG00000024376 Astyanax mexicanus ENSAMXG00000024376 I 0.865
ENSAMXG00000018539 Astyanax mexicanus ENSAMXG00000018539 I 0.638
ENSAMXG00000011241 Astyanax mexicanus ENSAMXG00000011241 I 0.683
ENSAMXG00000005661 Astyanax mexicanus ENSAMXG00000005661 I 0.865
ENSAMXG00000004039 Astyanax mexicanus ENSAMXG00000004039 I 0.865
ENSBTAP00000029049-D1 Bos grunniens ENSBTAP00000029049-D1 I 0.865
ENSP00000401769-D1 Bos grunniens ENSP00000401769-D1 I 0.638
ENSBTAP00000006184-D1 Bos grunniens ENSBTAP00000006184-D1 I 0.864
HNF1A Bos taurus ENSBTAG00000021795 I 0.865
HMBOX1 Bos taurus ENSBTAG00000010819 I 0.638
HNF1B Bos taurus ENSBTAG00000004710 I 0.864
fgenesh2_kg.scaffold_157000001 Branchiostoma floridae fgenesh2_kg.scaffold_157000001 I 0.859
fgenesh2_kg.scaffold_214000001 Branchiostoma floridae fgenesh2_kg.scaffold_214000001 I 0.859
Brh_R012838 Buceros rhinoceros Brh_R012838 I 0.638
Brh_R011090 Buceros rhinoceros Brh_R011090 I 0.865
HNF1B Callithrix jacchus ENSCJAG00000015174 I 0.864
HMBOX1 Callithrix jacchus ENSCJAG00000015654 I 0.638
Aan_R014136 Calypte anna Aan_R014136 I 0.864
Aan_R008292 Calypte anna Aan_R008292 I 0.865
Aan_R010756 Calypte anna Aan_R010756 I 0.638
HNF1B Canis familiaris ENSCAFG00000018150 I 0.864
HMBOX1 Canis familiaris ENSCAFG00000008237 I 0.638
HNF1A Canis familiaris ENSCAFG00000010502 I 0.865
CapteG124171 Capitella teleta CapteG124171 I 0.631
HMBOX1 Cavia porcellus ENSCPOG00000011124 I 0.638
HNF1A Cavia porcellus ENSCPOG00000007242 I 0.865
HNF1B Cavia porcellus ENSCPOG00000001234 I 0.864
Cmyd_10016186 Chelonia mydas Cmyd_10016186 I 0.864
Cmyd_10005786 Chelonia mydas Cmyd_10005786 I 0.638
Cmyd_10005161 Chelonia mydas Cmyd_10005161 I 0.865
ENSCSAG00000015894 Chlorocebus sabaeus ENSCSAG00000015894 I 0.638
ENSCSAG00000006125 Chlorocebus sabaeus ENSCSAG00000006125 I 0.864
ENSCSAG00000002227 Chlorocebus sabaeus ENSCSAG00000002227 I 0.865
HMBOX1 Choloepus hoffmanni ENSCHOG00000005538 I 0.638
HNF1B Choloepus hoffmanni ENSCHOG00000006010 I 0.864
ENSCING00000007645 Ciona intestinalis ENSCING00000007645 I 0.827
ENSCSAVG00000009827 Ciona savignyi ENSCSAVG00000009827 I 0.827
hmbox1a Danio rerio ENSDARG00000027082 I 0.638
zgc:91944 Danio rerio ENSDARG00000035887 I 0.683
hnf1ba Danio rerio ENSDARG00000006615 I 0.865
hnf1a Danio rerio ENSDARG00000009470 I 0.820
hmbox1b Danio rerio ENSDARG00000018913 I 0.638
hnf1bb Danio rerio ENSDARG00000022295 I 0.865
HMBOX1 Dasypus novemcinctus ENSDNOG00000031840 I 0.638
HNF1B Dasypus novemcinctus ENSDNOG00000001586 I 0.864
HNF1A Dasypus novemcinctus ENSDNOG00000000374 I 0.865
Hnf1a Dipodomys ordii ENSDORG00000007676 I 0.865
Hnf1b Dipodomys ordii ENSDORG00000009669 I 0.864
HMBOX1 Equus caballus ENSECAG00000008240 I 0.638
HNF1B Equus caballus ENSECAG00000015854 I 0.864
HNF1A Equus caballus ENSECAG00000019954 I 0.865
HNF1B Erinaceus europaeus ENSEEUG00000004998 I 0.865
HNF1A Felis catus ENSFCAG00000009638 I 0.865
HNF1B Felis catus ENSFCAG00000000241 I 0.864
HMBOX1 Felis catus ENSFCAG00000022672 I 0.638
ENSFALG00000005101 Ficedula albicollis ENSFALG00000005101 I 0.865
ENSFALG00000010859 Ficedula albicollis ENSFALG00000010859 I 0.638
ENSFALG00000007499 Ficedula albicollis ENSFALG00000007499 I 0.865
ENSGMOG00000016065 Gadus morhua ENSGMOG00000016065 I 0.865
ENSGMOG00000001038 Gadus morhua ENSGMOG00000001038 I 0.865
ENSGMOG00000006872 Gadus morhua ENSGMOG00000006872 I 0.638
ENSGMOG00000002742 Gadus morhua ENSGMOG00000002742 I 0.638
ENSGMOG00000004622 Gadus morhua ENSGMOG00000004622 I 0.683
HMBOX1 Gallus gallus ENSGALG00000016633 I 0.638
HNF1A Gallus gallus ENSGALG00000006968 I 0.865
HNF1B Gallus gallus ENSGALG00000005504 I 0.864
hmbox1b Gasterosteus aculeatus ENSGACG00000004391 I 0.638
hnf1a Gasterosteus aculeatus ENSGACG00000012691 I 0.807
zgc:91944 Gasterosteus aculeatus ENSGACG00000009223 I 0.683
hnf1ba Gasterosteus aculeatus ENSGACG00000011101 I 0.865
Gfo_R008926 Geospiza fortis Gfo_R008926 I 0.638
Gfo_R010877 Geospiza fortis Gfo_R010877 I 0.865
Gfo_R012758 Geospiza fortis Gfo_R012758 I 0.865
HNF1B Gorilla gorilla ENSGGOG00000006322 I 0.864
HMBOX1 Gorilla gorilla ENSGGOG00000000860 I 0.638
HNF1A Gorilla gorilla ENSGGOG00000004329 I 0.865
HelroG166133 Helobdella robusta HelroG166133 I 0.631
HNF1A Homo sapiens ENSG00000135100 D 0.865
HNF1B Homo sapiens ENSG00000275410 D 0.864
HMBOX1 Homo sapiens ENSG00000147421 D 0.638
ENSSTOG00000012440 Ictidomys tridecemlineatus ENSSTOG00000012440 I 0.864
ENSSTOG00000004719 Ictidomys tridecemlineatus ENSSTOG00000004719 I 0.865
ENSLACG00000017915 Latimeria chalumnae ENSLACG00000017915 I 0.865
ENSLACG00000012983 Latimeria chalumnae ENSLACG00000012983 I 0.865
ENSLACG00000011304 Latimeria chalumnae ENSLACG00000011304 I 0.638
ENSLOCG00000015994 Lepisosteus oculatus ENSLOCG00000015994 I 0.638
ENSLOCG00000001916 Lepisosteus oculatus ENSLOCG00000001916 I 0.638
ENSLOCG00000005942 Lepisosteus oculatus ENSLOCG00000005942 I 0.865
ENSLOCG00000002874 Lepisosteus oculatus ENSLOCG00000002874 I 0.865
HMBOX1 Loxodonta africana ENSLAFG00000032318 I 0.638
HNF1A Loxodonta africana ENSLAFG00000017872 I 0.865
HNF1B Loxodonta africana ENSLAFG00000002573 I 0.864
ENSP00000257555 Macaca fascicularis ENSP00000257555 I 0.865
ENSP00000225893 Macaca fascicularis ENSP00000225893 I 0.864
ENSP00000401769 Macaca fascicularis ENSP00000401769 I 0.638
HNF1B Macaca mulatta ENSMMUG00000003431 I 0.864
HMBOX1 Macaca mulatta ENSMMUG00000014981 I 0.638
ENSMEUG00000004163 Macropus eugenii ENSMEUG00000004163 I 0.865
ENSMEUG00000015023 Macropus eugenii ENSMEUG00000015023 I 0.638
HNF1A Meleagris gallopavo ENSMGAG00000008538 I 0.865
HNF1B Meleagris gallopavo ENSMGAG00000008126 I 0.865
HNF1B Monodelphis domestica ENSMODG00000019108 I 0.864
HMBOX1 Monodelphis domestica ENSMODG00000008788 I 0.638
HNF1A Monodelphis domestica ENSMODG00000002966 I 0.865
ENSMPUG00000015004 Mustela putorius furo ENSMPUG00000015004 I 0.864
ENSMPUG00000003290 Mustela putorius furo ENSMPUG00000003290 I 0.865
ENSMPUG00000001070 Mustela putorius furo ENSMPUG00000001070 I 0.638
Hmbox1 Mus musculus ENSMUSG00000021972 D 0.638
Hnf1b Mus musculus ENSMUSG00000020679 D 0.864
Hnf1a Mus musculus ENSMUSG00000029556 D 0.859
Myotis_brandtii_HNF1B_10031016 Myotis brandtii Myotis_brandtii_HNF1B_10031016 I 0.864
Myotis_brandtii_HNF1A_10028127 Myotis brandtii Myotis_brandtii_HNF1A_10028127 I 0.865
Myotis_brandtii_HMBOX1_10012332 Myotis brandtii Myotis_brandtii_HMBOX1_10012332 I 0.638
HNF1A Myotis lucifugus ENSMLUG00000009109 I 0.865
HNF1B Myotis lucifugus ENSMLUG00000012260 I 0.864
HMBOX1 Myotis lucifugus ENSMLUG00000007478 I 0.638
ENSNLEG00000002919 Nomascus leucogenys ENSNLEG00000002919 I 0.864
ENSNLEG00000016701 Nomascus leucogenys ENSNLEG00000016701 I 0.638
HNF1B Ochotona princeps ENSOPRG00000003933 I 0.864
HNF1A Ochotona princeps ENSOPRG00000001671 I 0.865
SNAPOd2T00002150001 Oikopleura dioica SNAPOd2T00002150001 I 0.843
Ogr03456 Ophisaurus gracilis Ogr03456 I 0.865
ENSONIG00000001328 Oreochromis niloticus ENSONIG00000001328 I 0.638
ENSONIG00000013161 Oreochromis niloticus ENSONIG00000013161 I 0.865
ENSONIG00000011178 Oreochromis niloticus ENSONIG00000011178 I 0.820
ENSONIG00000007704 Oreochromis niloticus ENSONIG00000007704 I 0.683
HNF1A Ornithorhynchus anatinus ENSOANG00000014646 I 0.865
HNF1B Oryctolagus cuniculus ENSOCUG00000003682 I 0.864
HMBOX1 Oryctolagus cuniculus ENSOCUG00000017211 I 0.638
ENSORLG00000018971 Oryzias latipes ENSORLG00000018971 I 0.804
hnf1ba Oryzias latipes ENSORLG00000004564 I 0.865
hmbox1b Oryzias latipes ENSORLG00000016242 I 0.638
zgc:91944 Oryzias latipes ENSORLG00000020883 I 0.683
HNF1B Otolemur garnettii ENSOGAG00000000869 I 0.864
HNF1A Otolemur garnettii ENSOGAG00000009071 I 0.865
HMBOX1 Otolemur garnettii ENSOGAG00000001381 I 0.638
ENSOARG00000003338 Ovis aries ENSOARG00000003338 I 0.864
ENSOARG00000013764 Ovis aries ENSOARG00000013764 I 0.865
ENSOARG00000015036 Ovis aries ENSOARG00000015036 I 0.638
HNF1B Pan troglodytes ENSPTRG00000009059 I 0.864
HNF1A Pan troglodytes ENSPTRG00000005551 I 0.865
HMBOX1 Pan troglodytes ENSPTRG00000020127 I 0.638
ENSPANG00000022102 Papio anubis ENSPANG00000022102 I 0.864
ENSPANG00000014537 Papio anubis ENSPANG00000014537 I 0.638
ENSPANG00000008728 Papio anubis ENSPANG00000008728 I 0.865
ENSPSIG00000013055 Pelodiscus sinensis ENSPSIG00000013055 I 0.865
ENSPSIG00000016826 Pelodiscus sinensis ENSPSIG00000016826 I 0.638
ENSPSIG00000009511 Pelodiscus sinensis ENSPSIG00000009511 I 0.864
ENSPFOG00000012263 Poecilia formosa ENSPFOG00000012263 I 0.683
ENSPFOG00000000843 Poecilia formosa ENSPFOG00000000843 I 0.638
ENSPFOG00000009496 Poecilia formosa ENSPFOG00000009496 I 0.865
ENSPFOG00000013053 Poecilia formosa ENSPFOG00000013053 I 0.820
Pvit_13545 Pogona vitticeps Pvit_13545 I 0.864
Pvit_03697 Pogona vitticeps Pvit_03697 I 0.865
ENSPPYG00000018480 Pongo abelii ENSPPYG00000018480 I 0.638
ENSPPYG00000008222 Pongo abelii ENSPPYG00000008222 I 0.864
HNF1B Procavia capensis ENSPCAG00000008147 I 0.864
HMBOX1 Procavia capensis ENSPCAG00000012005 I 0.638
HNF1B Pteropus vampyrus ENSPVAG00000010466 I 0.864
HNF1A Pteropus vampyrus ENSPVAG00000008044 I 0.865
Hnf1a Rattus norvegicus ENSRNOG00000001183 I 0.865
Hmbox1 Rattus norvegicus ENSRNOG00000013326 I 0.638
Hnf1b Rattus norvegicus ENSRNOG00000002598 I 0.864
Sakowv30011728m.g Saccoglossus kowalevskii Sakowv30011728m.g I 0.855
ENSSHAG00000005052 Sarcophilus harrisii ENSSHAG00000005052 I 0.864
ENSSHAG00000016211 Sarcophilus harrisii ENSSHAG00000016211 I 0.638
HNF1B Sorex araneus ENSSARG00000007152 I 0.864
SPU_010305 Strongylocentrotus purpuratus SPU_010305 I 0.843
SPU_022737 Strongylocentrotus purpuratus SPU_022737 I 0.675
SPU_002791 Strongylocentrotus purpuratus SPU_002791 I 0.675
HNF1A Sus scrofa ENSSSCG00000009919 I 0.865
HMBOX1 Sus scrofa ENSSSCG00000009682 I 0.638
HNF1B Sus scrofa ENSSSCG00000022417 I 0.864
HMBOX1 Taeniopygia guttata ENSTGUG00000013324 I 0.638
HNF1A Taeniopygia guttata ENSTGUG00000009673 I 0.865
hnf1a Takifugu rubripes ENSTRUG00000016222 I 0.820
hnf1ba Takifugu rubripes ENSTRUG00000003809 I 0.865
zgc:91944 Takifugu rubripes ENSTRUG00000012550 I 0.683
hmbox1b Takifugu rubripes ENSTRUG00000004378 I 0.638
ENSTSYG00000010701 Tarsius syrichta ENSTSYG00000010701 I 0.864
ENSTSYG00000001109 Tarsius syrichta ENSTSYG00000001109 I 0.638
hnf1ba Tetraodon nigroviridis ENSTNIG00000016225 I 0.865
hnf1a Tetraodon nigroviridis ENSTNIG00000011468 I 0.820
zgc:91944 Tetraodon nigroviridis ENSTNIG00000014025 I 0.683
TriadG28952 Trichoplax adhaerens TriadG28952 I 0.770
HMBOX1 Tursiops truncatus ENSTTRG00000015467 I 0.638
HNF1B Tursiops truncatus ENSTTRG00000015910 I 0.864
Tal_R010417 Tyto alba Tal_R010417 I 0.865
hnf1b.L Xenopus laevis XB-GENE-485656 I 0.867
hmbox1.S Xenopus laevis XB-GENE-6078482 I 0.638
hnf1a.S Xenopus laevis XB-GENE-865049 I 0.865
hnf1b.S Xenopus laevis XB-GENE-17330995 I 0.867
hnf1a Xenopus tropicalis XB-GENE-484117 I 0.865
XP_002939680 Xenopus tropicalis XP_002939680 I 0.867
ENSXMAG00000001795 Xiphophorus maculatus ENSXMAG00000001795 I 0.638
ENSXMAG00000003472 Xiphophorus maculatus ENSXMAG00000003472 I 0.820
ENSXMAG00000005730 Xiphophorus maculatus ENSXMAG00000005730 I 0.683
ENSXMAG00000011775 Xiphophorus maculatus ENSXMAG00000011775 I 0.865