nkx3-3.S (Xenopus laevis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XB-GENE-865322 T230659_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nkx3-2
M00506_2.00
Mus musculus
NNRAGDRNN

NNYHCTYNN
PBM
Berger et al.(2008)
Bapx1_2343
0.860 0.947
NKX3-2
M05012_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX
0.860 0.947
NKX3-2
M09138_2.00
Homo sapiens
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C
0.860 0.947
Nkx3-2
M09212_2.00
Mus musculus
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B
0.860 0.947
NKX3-2
M10663_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX32_01
0.860 0.947
NKX3-2
M05013_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1
0.860 0.947
NKX3-2
M05014_2.00
Homo sapiens
NTAACGHB

VDCGTTAN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2
0.860 0.947
bap
M00560_2.00
Drosophila melanogaster
NDAAGTRBNN

NNVYACTTHN
PBM
Busser et al.(2012a)
Bap
0.853 0.860
bap
M02119_2.00
Drosophila melanogaster
NYTAAGTRSNN

NNSYACTTARN
PBM
Weirauch et al.(2014)
pTH5945
0.853 0.860
bap
M03812_2.00
Drosophila melanogaster
NNTAAGTGBN

NVCACTTANN
SELEX
Nitta et al.(2015)
bap_1
0.853 0.860
bap
M06504_2.00
Drosophila melanogaster
TTAAGTR

YACTTAA
B1H
Mathelier et al.(2014)
MA0211.1
0.853 0.860
bap
M06287_2.00
Drosophila melanogaster
NBTTAAGTRN

NYACTTAAVN
B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862
0.853 0.860
bap
M06288_2.00
Drosophila melanogaster
NYTAAKTR

YAMTTARN
B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862
0.853 0.860
Nkx3-1
M00170_2.00
Mus musculus
NDAAGTRBNN

NNVYACTTHN
PBM
Badis et al.(2009)
Nkx3-1_2923
0.834 0.842
Nkx3-1
M00420_2.00
Mus musculus
NNAAGTRBNN

NNVYACTTNN
PBM
Berger et al.(2008)
Nkx3-1_2923
0.834 0.842
NKX3-1
M05255_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX
0.834 0.842
NKX3-1
M09154_2.00
Homo sapiens
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C
0.834 0.842
Nkx3-1
M09184_2.00
Mus musculus
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C
0.834 0.842
NKX3-1
M09559_2.00
Homo sapiens
BTRAGTRBYY

RRVYACTYAV
Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264
0.834 0.842
NKX3-1
M10729_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_01
0.834 0.842
NKX3-1
M10730_2.00
Homo sapiens
NWWTAAGTATWH

DWATACTTAWWN
Transfac
Matys et al.(2006)
V$NKX3A_01
0.834 0.842
NKX3-1
M10731_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX3A_Q3
0.834 0.842
NKX3-1
M05256_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1
0.834 0.842
NKX3-1
M05257_2.00
Homo sapiens
NTAAYSWB

VWSRTTAN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2
0.834 0.842
ENSCING00000007395
M02076_2.00
Ciona intestinalis
NNNDWNWR

YWNWHNNN
PBM
Weirauch et al.(2014)
pTH5922
0.825 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAC64197 Homeodomain 101 157

Links

Other Homeodomain family TFs
Other Xenopus laevis TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL006597 Aedes aegypti AAEL006597 I 0.858
Aan_R009530 Calypte anna Aan_R009530 I 0.715
AARA010121 Anopheles arabiensis AARA010121 I 0.846
AATE016309 Anopheles atroparvus AATE016309 I 0.846
ACEP23863 Atta cephalotes ACEP23863 I 0.845
ACHR006588 Anopheles christyi ACHR006588 I 0.846
ACOM028774 Anopheles coluzzii ACOM028774 I 0.846
ACUA019412 Anopheles culicifacies ACUA019412 I 0.846
ACYPI002893 Acyrthosiphon pisum ACYPI002893 I 0.860
ADAC003526 Anopheles darlingi ADAC003526 I 0.846
ADIR005347 Anopheles dirus ADIR005347 I 0.846
AEPI001627 Anopheles epiroticus AEPI001627 I 0.846
AFAF013479 Anopheles farauti AFAF013479 I 0.846
AFUN008966 Anopheles funestus AFUN008966 I 0.846
AGAP003671 Anopheles gambiae AGAP003671 I 0.846
Alligator_sinensis_CCG000534.1 Alligator sinensis Alligator_sinensis_CCG000534.1 I 0.860
AMAM011860 Anopheles maculatus AMAM011860 I 0.846
AMEC017317 Anopheles melas AMEC017317 I 0.846
AMEM005009 Anopheles merus AMEM005009 I 0.846
AMIN004031 Anopheles minimus AMIN004031 I 0.846
AQUA001538 Anopheles quadriannulatus AQUA001538 I 0.846
ASIM_0001224701 Anisakis simplex ASIM_0001224701 I 0.614
ASIS007650 Anopheles sinensis ASIS007650 I 0.846
ASTEI07437 Anopheles stephensi ASTEI07437 I 0.846
A_02450 Schistosoma haematobium A_02450 I 0.819
A_06201 Schistosoma haematobium A_06201 I 0.603
BGIBMGA010706 Bombyx mori BGIBMGA010706 I 0.862
BGLB010692 Biomphalaria glabrata BGLB010692 I 0.818
BTMF_0000772101 Brugia timori BTMF_0000772101 I 0.625
CapteG79432 Capitella teleta CapteG79432 I 0.839
CGI_10023919 Crassostrea gigas CGI_10023919 I 0.848
CGOC_0001018301 Cylicostephanus goldi CGOC_0001018301 I 0.604
CLEC002956 Cimex lectularius CLEC002956 I 0.854
CPIJ004109 Culex quinquefasciatus CPIJ004109 I 0.858
CpipJ_CPIJ004109 Culex pipiens CpipJ_CPIJ004109 I 0.858
csin109461 Clonorchis sinensis csin109461 I 0.818
D915_02578 Fasciola hepatica D915_02578 I 0.693
D918_06873 Trichuris suis D918_06873 I 0.633
ECANG7_00763 Echinococcus canadensis ECANG7_00763 I 0.640
EmuJ_000895600 Echinococcus multilocularis EmuJ_000895600 I 0.640
ENSACAG00000026683 Anolis carolinensis ENSACAG00000026683 I 0.834
ENSAMEG00000002866 Ailuropoda melanoleuca ENSAMEG00000002866 I 0.834
ENSAMEG00000009342 Ailuropoda melanoleuca ENSAMEG00000009342 I 0.860
ENSAMXG00000002250 Astyanax mexicanus ENSAMXG00000002250 I 0.848
ENSAMXG00000003840 Astyanax mexicanus ENSAMXG00000003840 I 0.860
ENSAMXG00000009415 Astyanax mexicanus ENSAMXG00000009415 I 0.645
ENSAMXG00000015414 Astyanax mexicanus ENSAMXG00000015414 I 0.607
ENSAMXG00000024837 Astyanax mexicanus ENSAMXG00000024837 I 0.844
ENSAPLG00000014690 Anas platyrhynchos ENSAPLG00000014690 I 0.832
NKX3-1 Bos taurus ENSBTAG00000001221 I 0.834
NKX3-2 Bos taurus ENSBTAG00000010896 I 0.860
ENSBTAP00000001615-D1 Bos grunniens ENSBTAP00000001615-D1 I 0.834
ENSCAFG00000009107 Canis familiaris ENSCAFG00000009107 I 0.834
NKX3-2 Canis familiaris ENSCAFG00000015412 I 0.860
NKX2-6 Canis familiaris ENSCAFG00000024691 I 0.605
ENSCHOG00000011132 Choloepus hoffmanni ENSCHOG00000011132 I 0.834
ENSCING00000007395 Ciona intestinalis ENSCING00000007395 D 0.825
hlx Ciona intestinalis ENSCING00000019191 I 0.602
NKX3-2 Callithrix jacchus ENSCJAG00000012159 I 0.860
NKX3-1 Callithrix jacchus ENSCJAG00000020092 I 0.834
NKX3-2 Cavia porcellus ENSCPOG00000005449 I 0.860
ENSCPOG00000010557 Cavia porcellus ENSCPOG00000010557 I 0.834
ENSCSAG00000016229 Chlorocebus sabaeus ENSCSAG00000016229 I 0.834
ENSCSAG00000016338 Chlorocebus sabaeus ENSCSAG00000016338 I 0.860
nkx3.2 Danio rerio ENSDARG00000037639 I 0.860
nkx3.3 Danio rerio ENSDARG00000069327 I 0.854
nkx3-1 Danio rerio ENSDARG00000078280 I 0.837
NKX3-2 Dasypus novemcinctus ENSDNOG00000043074 I 0.860
NKX3-1 Dasypus novemcinctus ENSDNOG00000044451 I 0.834
ENSECAG00000001509 Equus caballus ENSECAG00000001509 I 0.834
NKX2-6 Equus caballus ENSECAG00000013714 I 0.605
NKX3-1 Erinaceus europaeus ENSEEUG00000001113 I 0.834
ENSEEUG00000012691 Erinaceus europaeus ENSEEUG00000012691 I 0.860
NKX3-1 Echinops telfairi ENSETEG00000018790 I 0.834
ENSFALG00000011121 Ficedula albicollis ENSFALG00000011121 I 0.832
NKX3-2 Homo sapiens ENSG00000109705 D 0.860
NKX3-1 Homo sapiens ENSG00000167034 D 0.834
nkx3.3 Gasterosteus aculeatus ENSGACG00000007573 I 0.848
nkx3-1 Gasterosteus aculeatus ENSGACG00000010776 I 0.832
nkx3.2 Gasterosteus aculeatus ENSGACG00000016378 I 0.860
NKX3-2 Gorilla gorilla ENSGGOG00000008589 I 0.860
NKX3-1 Gorilla gorilla ENSGGOG00000014369 I 0.834
ENSGMOG00000005518 Gadus morhua ENSGMOG00000005518 I 0.832
ENSGMOG00000018725 Gadus morhua ENSGMOG00000018725 I 0.860
ENSLACG00000003608 Latimeria chalumnae ENSLACG00000003608 I 0.860
ENSLACG00000012763 Latimeria chalumnae ENSLACG00000012763 I 0.849
NKX3-1 Loxodonta africana ENSLAFG00000008941 I 0.834
NKX3-2 Loxodonta africana ENSLAFG00000031404 I 0.860
ENSLOCG00000009031 Lepisosteus oculatus ENSLOCG00000009031 I 0.855
ENSLOCG00000009892 Lepisosteus oculatus ENSLOCG00000009892 I 0.860
ENSLOCG00000015015 Lepisosteus oculatus ENSLOCG00000015015 I 0.844
ENSMICG00000000190 Microcebus murinus ENSMICG00000000190 I 0.860
NKX3-1 Microcebus murinus ENSMICG00000011189 I 0.834
NKX3-1 Myotis lucifugus ENSMLUG00000006118 I 0.834
NKX3-2 Myotis lucifugus ENSMLUG00000008362 I 0.860
NKX3-1 Macaca mulatta ENSMMUG00000009796 I 0.834
ENSMMUG00000022026 Macaca mulatta ENSMMUG00000022026 I 0.860
NKX3-1 Monodelphis domestica ENSMODG00000016789 I 0.834
NKX3-2 Monodelphis domestica ENSMODG00000024753 I 0.860
ENSMPUG00000000476 Mustela putorius furo ENSMPUG00000000476 I 0.860
ENSMPUG00000003418 Mustela putorius furo ENSMPUG00000003418 I 0.834
Nkx3-1 Mus musculus ENSMUSG00000022061 D 0.834
Nkx3-2 Mus musculus ENSMUSG00000049691 D 0.860
ENSNLEG00000015968 Nomascus leucogenys ENSNLEG00000015968 I 0.834
ENSNLEG00000016256 Nomascus leucogenys ENSNLEG00000016256 I 0.860
NKX3-1 Ornithorhynchus anatinus ENSOANG00000008027 I 0.834
ENSOARG00000010071 Ovis aries ENSOARG00000010071 I 0.834
NKX3-1 Oryctolagus cuniculus ENSOCUG00000004294 I 0.834
NKX3-2 Oryctolagus cuniculus ENSOCUG00000009039 I 0.860
NKX3-1 Otolemur garnettii ENSOGAG00000001303 I 0.834
NKX3-2 Otolemur garnettii ENSOGAG00000015615 I 0.860
ENSONIG00000000279 Oreochromis niloticus ENSONIG00000000279 I 0.607
ENSONIG00000002379 Oreochromis niloticus ENSONIG00000002379 I 0.860
ENSONIG00000011762 Oreochromis niloticus ENSONIG00000011762 I 0.832
ENSONIG00000018347 Oreochromis niloticus ENSONIG00000018347 I 0.711
NKX3-1 Ochotona princeps ENSOPRG00000003179 I 0.834
ENSOPRG00000005452 Ochotona princeps ENSOPRG00000005452 I 0.860
nkx3.2 Oryzias latipes ENSORLG00000000593 I 0.860
ENSORLG00000007716 Oryzias latipes ENSORLG00000007716 I 0.849
nkx3-1 Oryzias latipes ENSORLG00000010925 I 0.844
ENSP00000370253 Macaca fascicularis ENSP00000370253 I 0.834
ENSP00000371875 Macaca fascicularis ENSP00000371875 I 0.844
ENSPANG00000004934 Papio anubis ENSPANG00000004934 I 0.834
ENSPANG00000021310 Papio anubis ENSPANG00000021310 I 0.860
NKX3-2 Procavia capensis ENSPCAG00000013077 I 0.860
ENSPCAG00000016644 Procavia capensis ENSPCAG00000016644 I 0.834
ENSPFOG00000002882 Poecilia formosa ENSPFOG00000002882 I 0.860
ENSPFOG00000009440 Poecilia formosa ENSPFOG00000009440 I 0.607
ENSPFOG00000009654 Poecilia formosa ENSPFOG00000009654 I 0.832
ENSPFOG00000020885 Poecilia formosa ENSPFOG00000020885 I 0.849
ENSPPYG00000014611 Pongo abelii ENSPPYG00000014611 I 0.860
ENSPPYG00000018442 Pongo abelii ENSPPYG00000018442 I 0.834
ENSPSIG00000012169 Pelodiscus sinensis ENSPSIG00000012169 I 0.860
ENSPSIG00000017342 Pelodiscus sinensis ENSPSIG00000017342 I 0.834
NKX3-1 Pan troglodytes ENSPTRG00000020081 I 0.834
ENSPTRG00000031253 Pan troglodytes ENSPTRG00000031253 I 0.860
NKX3-2 Pteropus vampyrus ENSPVAG00000002830 I 0.860
NKX3-1 Pteropus vampyrus ENSPVAG00000005378 I 0.834
NKX2-6 Pteropus vampyrus ENSPVAG00000005380 I 0.605
Nkx3-1 Rattus norvegicus ENSRNOG00000015477 I 0.834
Nkx3-2 Rattus norvegicus ENSRNOG00000060782 I 0.860
ENSSARG00000001895 Sorex araneus ENSSARG00000001895 I 0.834
ENSSHAG00000015475 Sarcophilus harrisii ENSSHAG00000015475 I 0.834
ENSSSCG00000024594 Sus scrofa ENSSSCG00000024594 I 0.860
ENSSSCG00000028216 Sus scrofa ENSSSCG00000028216 I 0.834
ENSSTOG00000021803 Ictidomys tridecemlineatus ENSSTOG00000021803 I 0.860
ENSTBEG00000002319 Tupaia belangeri ENSTBEG00000002319 I 0.834
ENSTGUG00000004550 Taeniopygia guttata ENSTGUG00000004550 I 0.610
nkx3.2 Tetraodon nigroviridis ENSTNIG00000015732 I 0.850
NKX2-3 Takifugu rubripes ENSTRUG00000002729 I 0.607
NKX2-3 Takifugu rubripes ENSTRUG00000003800 I 0.607
nkx3.2 Takifugu rubripes ENSTRUG00000014438 I 0.860
ENSTSYG00000007109 Tarsius syrichta ENSTSYG00000007109 I 0.834
ENSTTRG00000003623 Tursiops truncatus ENSTTRG00000003623 I 0.860
ENSTTRG00000012332 Tursiops truncatus ENSTTRG00000012332 I 0.696
NKX3-1 Vicugna pacos ENSVPAG00000004503 I 0.834
ENSXMAG00000005680 Xiphophorus maculatus ENSXMAG00000005680 I 0.607
ENSXMAG00000016282 Xiphophorus maculatus ENSXMAG00000016282 I 0.860
ENSXMAG00000020095 Xiphophorus maculatus ENSXMAG00000020095 I 0.849
ENSXMAG00000020262 Xiphophorus maculatus ENSXMAG00000020262 I 0.832
estExt_fgenesh2_pg.C_1430013 Branchiostoma floridae estExt_fgenesh2_pg.C_1430013 I 0.849
bap Drosophila melanogaster FBgn0004862 D 0.853
bap Drosophila simulans FBgn0067504 I 0.853
bap Drosophila sechellia FBgn0067536 I 0.853
GA20672 Drosophila pseudoobscura FBgn0080666 I 0.841
GF18600 Drosophila ananassae FBgn0095618 I 0.853
GG24598 Drosophila erecta FBgn0116730 I 0.853
GH22032 Drosophila grimshawi FBgn0129493 I 0.841
GI21951 Drosophila mojavensis FBgn0144680 I 0.841
GL27337 Drosophila persimilis FBgn0164918 I 0.841
GJ14311 Drosophila virilis FBgn0201526 I 0.841
GK14503 Drosophila willistoni FBgn0216509 I 0.841
GE25732 Drosophila yakuba FBgn0242790 I 0.853
GB47401 Apis mellifera GB47401 I 0.845
HelroG138724 Helobdella robusta HelroG138724 I 0.667
HelroG148616 Helobdella robusta HelroG148616 I 0.848
HMEL006181 Heliconius melpomene HMEL006181 I 0.862
Hsal_06436--XP_001120208.1_APIME Harpegnathos saltator Hsal_06436--XP_001120208.1_APIME I 0.845
ISCW014989 Ixodes scapularis ISCW014989 I 0.842
KGM_11246 Danaus plexippus KGM_11246 I 0.862
L893_g18140 Steinernema glaseri L893_g18140 I 0.628
LCUP000733 Lucilia cuprina LCUP000733 I 0.858
LDEC009723 Leptinotarsa decemlineata LDEC009723 I 0.834
LotgiG60615 Lottia gigantea LotgiG60615 I 0.837
MCINX004875 Melitaea cinxia MCINX004875 I 0.862
MCOS_0000074801 Mesocestoides corti MCOS_0000074801 I 0.676
MDOA010758 Musca domestica MDOA010758 I 0.846
MESCA006298 Megaselia scalaris MESCA006298 I 0.858
Minc11316 Meloidogyne incognita Minc11316 I 0.614
Myotis_brandtii_NKX3_10014306 Myotis brandtii Myotis_brandtii_NKX3_10014306 I 0.834
NEMVEDRAFT_v1g208034 Nematostella vectensis NEMVEDRAFT_v1g208034 I 0.844
nLs.2.1.2.g07743 Litomosoides sigmodontis nLs.2.1.2.g07743 I 0.623
NV25828 Nasonia vitripennis NV25828 I 0.845
Ocbimv22026957m.g Octopus bimaculoides Ocbimv22026957m.g I 0.848
PHUM439840 Pediculus humanus PHUM439840 I 0.849
PPAI010327 Phlebotomus papatasi PPAI010327 I 0.858
Pvit_15821 Pogona vitticeps Pvit_15821 I 0.860
PXEA_0003190801 Protopolystoma xenopodis PXEA_0003190801 I 0.808
RPRC001122 Rhodnius prolixus RPRC001122 I 0.853
Sakowv30040088m.g Saccoglossus kowalevskii Sakowv30040088m.g I 0.848
SINV22315 Solenopsis invicta SINV22315 I 0.845
SMAR005030 Strigamia maritima SMAR005030 I 0.848
Smp_140730 Schistosoma mansoni Smp_140730 I 0.819
SMRZ_0000016501 Schistosoma margrebowiei SMRZ_0000016501 I 0.819
SMTD_0000549701 Schistosoma mattheei SMTD_0000549701 I 0.819
SMU15003549 Schmidtea mediterranea SMU15003549 I 0.826
SPU_013047 Strongylocentrotus purpuratus SPU_013047 I 0.849
TASK_0000475201 Taenia asiatica TASK_0000475201 I 0.640
TC012743 Tribolium castaneum TC012743 I 0.834
TCLT_0000478201 Thelazia callipaeda TCLT_0000478201 I 0.738
tetur04g08350 Tetranychus urticae tetur04g08350 I 0.842
TsM_000540100 Taenia solium TsM_000540100 I 0.640
TTAC_0000184701 Hydatigera taeniaeformis TTAC_0000184701 I 0.640
TTRE_0000463801 Trichuris trichiura TTRE_0000463801 I 0.633
WUBG_10043 Wuchereria bancrofti WUBG_10043 I 0.611
nkx3-1.L Xenopus laevis XB-GENE-479031 I 0.846
nkx3-3 Xenopus tropicalis XB-GENE-479908 I 0.855
nkx3-1.S Xenopus laevis XB-GENE-6252708 I 0.846
nkx3-2 Xenopus tropicalis XB-GENE-876834 I 0.860
nkx3-2.S Xenopus laevis XB-GENE-876836 I 0.860
XP_002932598 Xenopus tropicalis XP_002932598 I 0.846
YQE_10102 Dendroctonus ponderosae YQE_10102 I 0.834