nkx3-3.S (Xenopus laevis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 XB-GENE-865322 T230659_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nkx3-2
M00506_2.00
Mus musculus
NNRAGDRNN

NNYHCTYNN
PBM
Berger et al.(2008)
Bapx1_2343
0.860 0.947
NKX3-2
M05012_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX
0.860 0.947
NKX3-2
M09138_2.00
Homo sapiens
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C
0.860 0.947
Nkx3-2
M09212_2.00
Mus musculus
TTAAGTGBNH

DNVCACTTAA
Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B
0.860 0.947
NKX3-2
M10663_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX32_01
0.860 0.947
NKX3-2
M05013_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1
0.860 0.947
NKX3-2
M05014_2.00
Homo sapiens
NTAACGHB

VDCGTTAN
SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2
0.860 0.947
bap
M00560_2.00
Drosophila melanogaster
NDAAGTRBNN

NNVYACTTHN
PBM
Busser et al.(2012a)
Bap
0.853 0.860
bap
M02119_2.00
Drosophila melanogaster
NYTAAGTRSNN

NNSYACTTARN
PBM
Weirauch et al.(2014)
pTH5945
0.853 0.860
bap
M03812_2.00
Drosophila melanogaster
NNTAAGTGBN

NVCACTTANN
SELEX
Nitta et al.(2015)
bap_1
0.853 0.860
bap
M06504_2.00
Drosophila melanogaster
TTAAGTR

YACTTAA
B1H
Mathelier et al.(2014)
MA0211.1
0.853 0.860
bap
M06287_2.00
Drosophila melanogaster
NBTTAAGTRN

NYACTTAAVN
B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862
0.853 0.860
bap
M06288_2.00
Drosophila melanogaster
NYTAAKTR

YAMTTARN
B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862
0.853 0.860
Nkx3-1
M00170_2.00
Mus musculus
NDAAGTRBNN

NNVYACTTHN
PBM
Badis et al.(2009)
Nkx3-1_2923
0.834 0.842
Nkx3-1
M00420_2.00
Mus musculus
NNAAGTRBNN

NNVYACTTNN
PBM
Berger et al.(2008)
Nkx3-1_2923
0.834 0.842
NKX3-1
M05255_2.00
Homo sapiens
NNTAAGTGSN

NSCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX
0.834 0.842
NKX3-1
M09154_2.00
Homo sapiens
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C
0.834 0.842
Nkx3-1
M09184_2.00
Mus musculus
NYDAAGTGBYWD

HWRVCACTTHRN
Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C
0.834 0.842
NKX3-1
M09559_2.00
Homo sapiens
BTRAGTRBYY

RRVYACTYAV
Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264
0.834 0.842
NKX3-1
M10729_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_01
0.834 0.842
NKX3-1
M10730_2.00
Homo sapiens
NWWTAAGTATWH

DWATACTTAWWN
Transfac
Matys et al.(2006)
V$NKX3A_01
0.834 0.842
NKX3-1
M10731_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NKX3A_Q3
0.834 0.842
NKX3-1
M05256_2.00
Homo sapiens
NNTAAGTGBN

NVCACTTANN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1
0.834 0.842
NKX3-1
M05257_2.00
Homo sapiens
NTAAYSWB

VWSRTTAN
SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2
0.834 0.842
ENSCING00000007395
M02076_2.00
Ciona intestinalis
NNNDWNWR

YWNWHNNN
PBM
Weirauch et al.(2014)
pTH5922
0.825 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAC64197 Homeodomain 101 157

Links

Other Homeodomain family TFs
Other Xenopus laevis TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACRE_018490 Acremonium chrysogenum ACRE_018490 I 0.000
adv-1 Neurospora crassa NCU07392 D 0.000
ARB_01430 Arthroderma benhamiae ARB_01430 N 0.000
AUEXF2481DRAFT_2961 Aureobasidium subglaciale AUEXF2481DRAFT_2961 I 0.000
Bcin01g10880 Botrytis cinerea Bcin01g10880 I 0.000
BGHDH14_bgh02455 Blumeria graminis BGHDH14_bgh02455 I 0.000
CFIO01_13377 Colletotrichum fioriniae CFIO01_13377 I 0.000
CGGC5_9983 Colletotrichum gloeosporioides CGGC5_9983 I 0.000
CHGG_00993 Chaetomium globosum CHGG_00993 I 0.000
CMQ_1089 Grosmannia clavigera CMQ_1089 I 0.000
Cob_04296 Colletotrichum orbiculare Cob_04296 I 0.000
COCC4DRAFT_71571 Bipolaris maydis COCC4DRAFT_71571 I 0.000
COCCADRAFT_2138 Bipolaris zeicola COCCADRAFT_2138 I 0.000
COCMIDRAFT_101771 Bipolaris oryzae COCMIDRAFT_101771 I 0.000
COCSADRAFT_95191 Bipolaris sorokiniana COCSADRAFT_95191 I 0.000
COCVIDRAFT_33542 Bipolaris victoriae COCVIDRAFT_33542 I 0.000
CPUR_07866 Claviceps purpurea CPUR_07866 I 0.000
CSUB01_00309 Colletotrichum sublineola CSUB01_00309 I 0.000
CTHT_0066850 Chaetomium thermophilum CTHT_0066850 I 0.000
estExt_Genewise1.C_140356 Cochliobolus heterostrophus C5 estExt_Genewise1.C_140356 I 0.000
estExt_Genewise1.C_40883 Neurospora discreta estExt_Genewise1.C_40883 I 0.000
estExt_Genewise1Plus.C_40892 Cryphonectria parasitica estExt_Genewise1Plus.C_40892 I 0.000
EV44_g2524 Erysiphe necator EV44_g2524 I 0.000
F503_07739 Ophiostoma piceae uamh F503_07739 I 0.000
FFUJ_02785 Fusarium fujikuroi FFUJ_02785 I 0.000
fgenesh1_pm.sca_3_chr4_2_0000275 Nectria haematococca fgenesh1_pm.sca_3_chr4_2_0000275 I 0.000
FGRRES_07067 Fusarium graminearum FGRRES_07067 I 0.000
FOXG_01740 Fusarium oxysporum FOXG_01740 I 0.000
FPSE_02717 Fusarium pseudograminearum FPSE_02717 I 0.000
FVEG_08110 Fusarium verticillioides FVEG_08110 I 0.000
GGTG_01417 Gaeumannomyces graminis GGTG_01417 I 0.000
GLRG_01448 Colletotrichum graminicola GLRG_01448 I 0.000
GMDG_04129 Pseudogymnoascus destructans GMDG_04129 I 0.000
HMPREF1624_08094 Sporothrix schenckii HMPREF1624_08094 I 0.000
M437DRAFT_47042 Aureobasidium melanogenum M437DRAFT_47042 I 0.000
M438DRAFT_406206 Aureobasidium pullulans M438DRAFT_406206 I 0.000
MAM_05720 Metarhizium album MAM_05720 I 0.000
MAPG_06641 Magnaporthe poae MAPG_06641 I 0.000
MBM_06136 Marssonina brunnea MBM_06136 I 0.000
MGG_00494 Magnaporthe oryzae MGG_00494 I 0.000
MPH_07854 Macrophomina phaseolina MPH_07854 N 0.000
MYCTH_2295908 Myceliophthora thermophila MYCTH_2295908 I 0.000
NechaG92660 Fusarium solani NechaG92660 I 0.000
NEUTE1DRAFT_125804 Neurospora tetrasperma NEUTE1DRAFT_125804 I 0.000
OIDMADRAFT_115392 Oidiodendron maius OIDMADRAFT_115392 I 0.000
PFICI_01836 Pestalotiopsis fici PFICI_01836 I 0.000
PTRG_02861 Pyrenophora triticirepentis PTRG_02861 I 0.000
PTT_14613 Pyrenophora teres PTT_14613 I 0.000
S40285_00766 Stachybotrys chlorohalonata S40285_00766 I 0.000
SAPIO_CDS3424 Scedosporium apiospermum SAPIO_CDS3424 I 0.000
SBOR_7426 Sclerotinia borealis SBOR_7426 I 0.000
SCHCODRAFT_114874 Schizophyllum commune SCHCODRAFT_114874 N 0.000
SETTUDRAFT_166291 Setosphaeria turcica SETTUDRAFT_166291 I 0.000
SMAC_00338 Sordaria macrospora SMAC_00338 I 0.000
SPBR_03426 Sporothrix brasiliensis SPBR_03426 I 0.000
THITE_2113863 Thielavia terrestris THITE_2113863 I 0.000
TRIATDRAFT_135729 Trichoderma atroviride TRIATDRAFT_135729 I 0.000
TRIREDRAFT_76590 Trichoderma reesei TRIREDRAFT_76590 I 0.000
TRIVIDRAFT_64402 Trichoderma virens TRIVIDRAFT_64402 I 0.000
U727_00430522121 Penicillium solitum U727_00430522121 N 0.000
UCREL1_10866 Eutypa lata UCREL1_10866 I 0.000
UCRNP2_4393 Neofusicoccum parvum UCRNP2_4393 N 0.000
UV8b_4390 Ustilaginoidea virens UV8b_4390 I 0.000
V499_09066 Pseudogymnoascus pannorum V499_09066 I 0.000
VDBG_04632 Verticillium alfalfae VDBG_04632 I 0.000
VDBG_04632 Verticillium albo atrum VDBG_04632 I 0.000
VHEMI02616 Torrubiella hemipterigena VHEMI02616 I 0.000
X797_004221 Metarhizium robertsii X797_004221 I 0.000